Search results

A bug and a runtime error.

Status: Open.

#43 In cerebis/sim3C;

· Yichen-HNU opened on Nov 8, 2024

How to use sim3C to generate hic simulation data of different lengths according to the restriction site?

Status: Open.

#41 In cerebis/sim3C;

· xujialupaoli opened on Jun 27, 2024

What does readID represent in the output simulation data?

Status: Open.

#40 In cerebis/sim3C;

· xujialupaoli opened on Jun 23, 2024

Bugs with WGS read strandedness and R1/R2 FASTQ output

Status: Open.

#39 In cerebis/sim3C;

· solveforj opened on Feb 28, 2024

WGS read-pairs are always from the same segment

Status: Open.

#31 In cerebis/sim3C;

· cerebis opened on Jan 26, 2024

Community profile format is cumbersome

Status: Open.

#30 In cerebis/sim3C;

· cerebis opened on Jan 26, 2024

Annotations for community definitions

enhancement

Status: Open.

#27 In cerebis/sim3C;

· cerebis opened on Jan 17, 2024

Bug / problem at end of chromosomes

Status: Open.

#26 In cerebis/sim3C;

· ivargr opened on May 24, 2023

Allow users to prescriptively modulate the interaction rates for specific coordinate pairs.

enhancement

Status: Open.

#19 In cerebis/sim3C;

· jazberna1 opened on Feb 17, 2021

References without cut-sites should still produce spurious read-pairs and not just excluded from simulation.

bug

enhancement

Status: Open.

#18 In cerebis/sim3C;

· Mustafa-Albekaa opened on Aug 25, 2020

Time-series integration

enhancement

Status: Open.

#10 In cerebis/sim3C;

· cerebis opened on Jan 17, 2019

Chromosome copies cannot form inter-chr products.

Status: Open.

#2 In cerebis/sim3C;

· cerebis opened on May 13, 2017