Snakemake workflow: ribo-seq_pipeline

This is a ribo-seq pipeline structured by snakemake template. It is in development. Insert your code into the respective folders, i.e. scripts, rules, and envs. Define the entry point of the workflow in the Snakefile and the main configuration in the config.yaml file.

Authors

• chaodi (@dic)

Usage

Running on respublica by: snakemake --use-conda -c "qsub -l h_vmem={params.mem} -l mem_free={params.mem} -pe smp {threads} -V -cwd -e qsub/{params.jobName}.e -o qsub/{params.jobName}.o" -j -p