SciPy stack support, nanshe dependencies, some changes from upstream (also old)#9

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jakirkham wants to merge 188 commits intochaubold:constrackingfrom

jakirkham:git_fix__OSX_10_9__SciPy_Stack

Commits on Dec 12, 2013

Vigra tests pass, include them again in the build.
chaubold
committed

Commits on Jan 15, 2014

Merge commit '38cd0e98768fd2d3387291dcc637ea403b3d3b19' into fix/OSX10.9
chaubold
committed

Commits on Jan 20, 2014

Do not link against rt for the combilp-test of opengm on mac.
chaubold
committed
Fix openexr linking against libstdc++
chaubold
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Make ilmbase compile on a clean machine as well, by adding stdlib to the LDFLAGS
chaubold
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Add openexr config stdlib flag to LDFLAGS
chaubold
committed
Help VTK find libpng15, although use_system_png is switched to OFF. Apparently something in VTK’s CMakeLists is wrong.
chaubold
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Properly compile boost against libstdc++ instead of libc++
chaubold
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Fix for the added stdlib parameters for VIGRA - quotation marks were missing.
chaubold
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Prevent pgmlink from overwriting the CXX_FLAGS
chaubold
committed

Commits on Jan 21, 2014

Commits on Jan 23, 2014

Merge commit '86aeddba8ff5b965d98f9089f2ee5ad918110187' into fix/OSX10.9
chaubold
committed

Commits on Feb 20, 2014

Make sure pyqt uses the proper SIP and Python by setting the appropriate PYTHONPATH
chaubold
committed

Commits on Mar 10, 2014

Commits on Apr 9, 2014

Set the pythonpath when building qimage2ndarray
chaubold
committed

Commits on Apr 11, 2014

Commits on Apr 13, 2014

sip: Corrected cmake file so that additional flags (-b, -d, -e, -v) are uncommented. They must be uncommented for the build to work. Otherwise, the build will fail to use the correct SIP and may us…
jakirkham
committed

Commits on Apr 22, 2014

Commits on Apr 23, 2014

Commits on Apr 24, 2014

Commits on May 27, 2014

joblib: Provided a separate cmake for joblib. Tested and it works. This isn't strictly necessary if scikit-learn is installed as it will have joblib under sklearn.externals. However, it doesn't hur…
jakirkham
committed

Commits on Aug 3, 2014

Commits on Aug 21, 2014

updates openssl package to work on Fedora 20

Stephen Plaza
authored and
jakirkham
committed
pip.cmake: Added pip for installing Python packages.
jakirkham
committed

Commits on Aug 30, 2014

Commits on Aug 31, 2014

Commits on Sep 23, 2014

Commits on Oct 14, 2014

Update psutil to fix https://github.com/ilastik/ilastik/issues/891

chaubold
authored and
jakirkham
committed

Commits on Oct 22, 2014

vigra.cmake: Eliminated extra spaces.
jakirkham
committed

Commits on Nov 21, 2014

Commits on Dec 12, 2014

Commits on Dec 15, 2014

templates/exec.template: Make exec.template an executable. This way, when it is copied to bin, it should be an executable.
jakirkham
committed

Commits on Dec 18, 2014

ilastik.cmake: Update the ilastik version.
jakirkham
committed

Commits on Jan 6, 2015

Commits on Jan 10, 2015

Commits on Jan 15, 2015

Commits on Jan 20, 2015

pylibtiff.cmake: Added pylibtiff to provide Python bindings to libtiff.
jakirkham
committed

Commits on Feb 24, 2015