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Merged
clemsgrs merged 1 commit into from
Dec 16, 2025
Merged

Release v2.0.0 #44

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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -23,7 +23,7 @@ warn_unused_configs = true
no_implicit_reexport = true

[tool.bumpver]
current_version = "1.4.0"
current_version = "2.0.0"
version_pattern = "MAJOR.MINOR.PATCH"
commit = false # We do version bumping in CI, not as a commit
tag = false # Git tag already exists — we don't auto-tag
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2 changes: 1 addition & 1 deletion setup.cfg
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@@ -1,6 +1,6 @@
[metadata]
name = slide2vec
version = 1.4.0
version = 2.0.0
description = Embedding of whole slide images with Foundation Models
author = Clément Grisi
platforms = unix, linux, osx, cygwin, win32
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2 changes: 1 addition & 1 deletion slide2vec/__init__.py
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@@ -1 +1 @@
__version__ = "1.4.0"
__version__ = "2.0.0"
6 changes: 3 additions & 3 deletions slide2vec/configs/conch.yaml
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@@ -1,6 +1,6 @@
csv: "/data/temporary/clement/notebooks/discern/prostate-bladder-breast-debug.csv" # path to csv containing slide paths
csv: "/data/temporary/clement/discern/multi-organ-1k.csv" # path to csv containing slide paths

output_dir: "output" # output directory
output_dir: "/data/temporary/clement/discern/slide2vec" # output directory

visualize: true

Expand All @@ -12,7 +12,7 @@ tiling:
model:
level: "tile" # level at which to extract the features ("tile", "region" or "slide")
name: "conch"
batch_size: 1
batch_size: 32

speed:
fp16: true # use mixed precision during model inference
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