feat: docstrings and overall design for expectation maximization iterative refinement#21
Open
feat: docstrings and overall design for expectation maximization iterative refinement#21
Conversation
Collaborator
Author
|
currently only 2D ffts in compSPI.transforms. can use torch.fft for 3d fft and convert back to numpy array |
|
I added my comments. Refactor and pull out the functions to be defined outside. I just wrote it like this to start it off because it's more readable - things defined right where they are used. |
Collaborator
Author
|
im not sure whats going on with black... |
added 11 commits
March 30, 2022 18:41
…constructSPI into itr_ref_docstrings
…constructSPI into itr_ref_docstrings
|
This PR should be into master. |
Collaborator
I had it into reconstructSPI_infrastructure due to it being a branch off of that - upon reflection you're right that doesn't imply this PR needs to be into master! |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fixes #10
References
In Physical Models of Living Systems (pp. 305–325).
https://repository.upenn.edu/cgi/viewcontent.cgi?article=1665&context=physics_papers
Journal of Structural Biology, 180(3), 519–530.
http://doi.org/10.1016/j.jsb.2012.09.006
An Introduction to Maximum-Likelihood Methods in Cryo-EM.
In Methods in Enzymology (1st ed., Vol. 482, pp. 263–294). Elsevier Inc.
http://doi.org/10.1016/S0076-6879(10)82011-7