Config and command refactor#6

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cpplain wants to merge 101 commits intomainfrom

config-command-refactor

Commits on Feb 21, 2026

chore: add Lorah configuration for CLI refactor
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chore(lorah): initialize CLI refactor task list and progress tracking
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feat(config): add flag-based config and ignore file support
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feat(config): implement config merging with CLI precedence
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feat(linker): add LinkOptions struct for package-based API
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feat(linker): implement CreateLinksWithOptions for package-based linking
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feat(linker): implement RemoveLinksWithOptions for package-based removal
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feat(status): implement StatusWithOptions for package-based status
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feat(linker): implement PruneWithOptions for package-based pruning
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refactor(linker): decouple collectPlannedLinks from Config dependency
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feat(link-utils): implement FindManagedLinksForSources for package-based link discovery
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feat(cli)\!: rewrite CLI to use flag-based interface
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feat(adopt): implement AdoptWithOptions for package-based adoption
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feat(orphan): implement OrphanWithOptions for package-based orphaning
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test(e2e): rewrite tests for new flag-based CLI interface
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chore: complete verification examples and all refactoring tasks
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Commits on Feb 22, 2026

Commits on Feb 23, 2026

Commits on Mar 6, 2026

Commits on Mar 7, 2026

chore(scripts): update testdata paths from e2e/ to test/
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Commits on Mar 8, 2026

docs(specs): add initial specification suite as work in progress
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Commits on Mar 14, 2026

Commits on Mar 15, 2026