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@amotl amotl commented Oct 16, 2025

@amotl amotl added the cross linking Linking to different locations of the documentation. label Oct 16, 2025
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Walkthrough

Adds R driver documentation: inserts an R driver card into the "Drivers by language" grid on docs/connect/index.md and adds a new R connectivity guide at docs/connect/r/index.md describing RPostgres/RPostgreSQL usage, examples, and CrateDB Cloud notes.

Changes

Cohort / File(s) Summary
Connect index updates
docs/connect/index.md
Adds a new R driver grid card (using {fab}r-project) before the Ruby card and includes r/index in the drivers toctree.
R connectivity guide
docs/connect/r/index.md
New page documenting R connectivity: RPostgres and RPostgreSQL options, installation, full example code, CrateDB Cloud sslmode guidance, quickstart and examples, and a link/card to R examples.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~10 minutes

  • Verify docs/connect/index.md card placement, classes, and consistency with other language cards.
  • Validate docs/connect/r/index.md examples for accurate R syntax and CrateDB Cloud sslmode guidance.
  • Check toctree formatting and internal link correctness.

Possibly related PRs

Suggested reviewers

  • seut
  • matriv

Poem

🐰 In a burrow of docs I hop with delight,

An R card appears, cozy and bright.
RPostgres ready, connections that sing,
Queries and clouds — let the data bells ring! 🎶

Pre-merge checks and finishing touches

❌ Failed checks (1 warning)
Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%. You can run @coderabbitai generate docstrings to improve docstring coverage.
✅ Passed checks (2 passed)
Check name Status Explanation
Title Check ✅ Passed The pull request title "Driver: Add page about R" directly and clearly describes the main change in the changeset. The PR adds a new R driver documentation page (docs/connect/r/index.md) with accompanying updates to the drivers index page (docs/connect/index.md). The title is concise, specific, and accurately summarizes the primary change without unnecessary verbosity. A developer scanning the commit history would immediately understand that this introduces R connectivity documentation.
Description Check ✅ Passed The pull request description is related to the changeset, as it references the addition of R documentation through the preview build URL. While the description is minimal and somewhat vague ("What the title says"), it is not completely off-topic or unrelated to the changes. The preview link directly points to the new R driver documentation page being added. Since level of detail is not a criterion for this check, the description meets the requirement of being related to the changeset in some way.
✨ Finishing touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Post copyable unit tests in a comment
  • Commit unit tests in branch r-ng

📜 Recent review details

Configuration used: CodeRabbit UI

Review profile: CHILL

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 5a9974f and 0f7fb4d.

📒 Files selected for processing (2)
  • docs/connect/index.md (2 hunks)
  • docs/connect/r/index.md (1 hunks)
🚧 Files skipped from review as they are similar to previous changes (1)
  • docs/connect/index.md
🧰 Additional context used
🧠 Learnings (21)
📓 Common learnings
Learnt from: amotl
PR: crate/cratedb-guide#0
File: :0-0
Timestamp: 2025-10-06T16:40:16.322Z
Learning: In the crate/cratedb-guide repository, documentation is organized by content type: files in `docs/feature/`, `docs/integrate/`, and `docs/ingest/` are reference material designed for quick access, while `docs/start/` contains learning path content. Reference material sections use top-right reference layouts for efficient navigation.
📚 Learning: 2025-10-19T19:21:49.864Z
Learnt from: amotl
PR: crate/cratedb-guide#420
File: docs/connect/erlang.md:100-113
Timestamp: 2025-10-19T19:21:49.864Z
Learning: In the cratedb-guide repository, when documenting cloud or alternative connection methods, show only the differences from the canonical example (e.g., SSL configuration) rather than repeating the entire workflow (query execution, cleanup, etc.). This pattern is used consistently across pages to avoid repetition.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-09-25T19:31:54.320Z
Learnt from: bmunkholm
PR: crate/cratedb-guide#340
File: docs/home/index.md:84-97
Timestamp: 2025-09-25T19:31:54.320Z
Learning: In the CrateDB Guide docs (MyST), the CrateDB Cloud card on the homepage should link to `getting-started` using `:link-type: ref` instead of the previous `cloud:index` intersphinx target. This change was implemented in PR #340 to direct users to the getting started section rather than directly to the Cloud documentation.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-07T10:19:41.866Z
Learnt from: amotl
PR: crate/cratedb-guide#364
File: docs/tutorial/index.md:48-55
Timestamp: 2025-10-07T10:19:41.866Z
Learning: In MyST (Markdown Structured Text) syntax used in the CrateDB Guide docs, bare URLs in directive options like `:link:` are perfectly valid and expected. For example, `:::{card} :link: https://learn.cratedb.com/ :::` is correct MyST syntax. The markdownlint MD034 warning for bare URLs in these directive options is a false positive because markdownlint doesn't understand MyST-specific syntax.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-10T17:58:26.545Z
Learnt from: amotl
PR: crate/cratedb-guide#395
File: docs/install/cloud/azure/terraform.md:108-127
Timestamp: 2025-10-10T17:58:26.545Z
Learning: In the crate/cratedb-guide repository, during documentation format conversions (e.g., from reStructuredText to MyST/Markdown), markdownlint warnings such as MD053 (unused reference-style links) should be ignored and not flagged as issues.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-10T17:09:32.616Z
Learnt from: amotl
PR: crate/cratedb-guide#241
File: docs/integrate/azure-functions/index.md:31-36
Timestamp: 2025-08-10T17:09:32.616Z
Learning: In the CrateDB Guide documentation, RST files (`.rst`) use reStructuredText anchor syntax `.. _anchor-name:` while Markdown files (`.md`) use MyST syntax `(anchor-name)=`. Cross-references between MyST Markdown and reStructuredText files work correctly - a MyST `:link:` directive can reference an RST anchor and vice versa.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-20T21:49:18.785Z
Learnt from: amotl
PR: crate/cratedb-guide#406
File: docs/connect/go.md:110-137
Timestamp: 2025-10-20T21:49:18.785Z
Learning: In the cratedb-guide repository, documentation examples for connecting to CrateDB (e.g., Go examples in docs/connect/go.md) should be kept minimal and focused on demonstrating basic functionality, rather than including comprehensive error handling. Full examples with proper error handling are maintained separately in the cratedb-examples repository.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-09T21:40:46.154Z
Learnt from: amotl
PR: crate/cratedb-guide#238
File: docs/integrate/streamsets/index.md:18-21
Timestamp: 2025-08-09T21:40:46.154Z
Learning: In the CrateDB Guide documentation, reStructuredText files (`.rst`) use the RST label syntax `.. _label:` while MyST Markdown files (`.md`) use the syntax `(label)=`. Both formats are used throughout the repository and labels can be cross-referenced between them.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-09-22T22:05:05.734Z
Learnt from: amotl
PR: crate/cratedb-guide#279
File: docs/integrate/airflow/data-retention-hot-cold.md:14-14
Timestamp: 2025-09-22T22:05:05.734Z
Learning: When searching for labels in the CrateDB Guide documentation, remember that reStructuredText files (.rst) use the syntax `.. _label:` while MyST Markdown files (.md) use the syntax `(label)=`. Cross-references work between formats, so {ref}`label` in MyST can reference an RST label defined with `.. _label:`.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-10T18:17:49.380Z
Learnt from: amotl
PR: crate/cratedb-guide#241
File: docs/integrate/mysql/index.md:51-55
Timestamp: 2025-08-10T18:17:49.380Z
Learning: In the CrateDB Guide documentation, the file `docs/integrate/mysql/import-csv.rst` contains the reStructuredText label `.. _mysql-import-csv:` which can be referenced from MyST Markdown files using `:link: mysql-import-csv` with `:link-type: ref`. This is another example of cross-format referencing between MyST and RST files working correctly in Sphinx.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-22T18:11:12.776Z
Learnt from: amotl
PR: crate/cratedb-guide#263
File: docs/integrate/kafka/docker-python.md:112-120
Timestamp: 2025-08-22T18:11:12.776Z
Learning: In documentation and tutorial repositories like cratedb-guide, code examples should prioritize simplicity, clarity, and educational value over production-ready features. Comprehensive error handling, extensive validation, and other production concerns can distract from the main learning objectives and make examples harder to follow. Review suggestions should focus on correctness and clarity rather than production hardening.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-09T11:00:03.578Z
Learnt from: amotl
PR: crate/cratedb-guide#236
File: docs/index.md:312-316
Timestamp: 2025-08-09T11:00:03.578Z
Learning: In the CrateDB Guide documentation, locally stale references (such as `(reference-architectures)=`, `(domain)=`, and similar anchor labels) should be retained even when they appear unused within the repository, as external projects might still reference them. This ensures backward compatibility for external documentation and projects.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-06T02:11:46.794Z
Learnt from: amotl
PR: crate/cratedb-guide#222
File: docs/integrate/powerbi/index.md:16-23
Timestamp: 2025-08-06T02:11:46.794Z
Learning: The `project:` role in MyST Markdown syntax like `[](project:#powerbi-desktop)` and `[](project:#powerbi-service)` is valid cross-reference syntax in the CrateDB Guide repository's MyST Markdown setup.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-09T11:03:33.178Z
Learnt from: amotl
PR: crate/cratedb-guide#236
File: docs/ingest/etl/index.md:22-23
Timestamp: 2025-08-09T11:03:33.178Z
Learning: In the CrateDB Guide documentation, MyST Markdown files can use `{ref}` directives to reference labels defined in reStructuredText files using the RST syntax `.. _label:`. This cross-format referencing between MyST and RST is supported by Sphinx.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-06T13:45:25.891Z
Learnt from: amotl
PR: crate/cratedb-guide#0
File: :0-0
Timestamp: 2025-10-06T13:45:25.891Z
Learning: For the cratedb-guide repository, general discussions and broader documentation concerns should be added to the existing runsheet/tracking ticket (e.g., GH-227) rather than creating separate issues.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-06T16:40:16.322Z
Learnt from: amotl
PR: crate/cratedb-guide#0
File: :0-0
Timestamp: 2025-10-06T16:40:16.322Z
Learning: In the crate/cratedb-guide repository, documentation is organized by content type: files in `docs/feature/`, `docs/integrate/`, and `docs/ingest/` are reference material designed for quick access, while `docs/start/` contains learning path content. Reference material sections use top-right reference layouts for efficient navigation.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-09-17T14:31:04.228Z
Learnt from: amotl
PR: crate/cratedb-guide#0
File: :0-0
Timestamp: 2025-09-17T14:31:04.228Z
Learning: In Rill tutorial documentation for CrateDB integration, convert passive voice constructions like "will be directed", "can be done", "should open" to active voice alternatives such as "directs you", "enables", "opens" to create clearer, more direct instructions.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-08-14T19:02:43.308Z
Learnt from: amotl
PR: crate/cratedb-guide#253
File: docs/integrate/mindsdb/index.md:21-33
Timestamp: 2025-08-14T19:02:43.308Z
Learning: In CrateDB integration documentation examples, default connection parameters (user="crate", password="", host="127.0.0.1") are intentionally used to provide working out-of-the-box examples for users with local CrateDB instances, rather than using placeholder values that require customization.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-06-05T14:29:15.512Z
Learnt from: amotl
PR: crate/cratedb-guide#207
File: docs/integrate/etl/iceberg-risingwave.md:205-207
Timestamp: 2025-06-05T14:29:15.512Z
Learning: The `records.Database("crate://", echo=True)` connection string for CrateDB works with defaults: localhost as host, "crate" as user, and blank password. This is valid and functional code in the records library.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-16T10:58:18.401Z
Learnt from: amotl
PR: crate/cratedb-guide#408
File: docs/connect/elixir.md:18-22
Timestamp: 2025-10-16T10:58:18.401Z
Learning: When connecting to CrateDB using PostgreSQL-compatible drivers like Postgrex (Elixir), the `database` parameter handling may differ from standard PostgreSQL usage because CrateDB has no notion of databases like PostgreSQL does. CrateDB uses schemas to separate concerns instead. The `database` parameter might need to be omitted or handled differently to avoid connection issues.

Applied to files:

  • docs/connect/r/index.md
📚 Learning: 2025-10-08T01:34:18.867Z
Learnt from: amotl
PR: crate/cratedb-guide#385
File: docs/connect/java.md:48-51
Timestamp: 2025-10-08T01:34:18.867Z
Learning: CrateDB JDBC driver uses the `jdbc:crate://` protocol scheme but communicates via the PostgreSQL wire protocol on port 5432, just like the PostgreSQL JDBC driver (`jdbc:postgresql://`). Do not confuse the `jdbc:crate://` scheme with other protocol schemes like `crate://` (used by SQLAlchemy dialect for CrateDB) or assume it uses the HTTP endpoint on port 4200.

Applied to files:

  • docs/connect/r/index.md
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  • GitHub Check: Build docs
🔇 Additional comments (1)
docs/connect/r/index.md (1)

1-97: Looks good! Documentation structure is clear and follows project patterns.

The R driver documentation is well-organized with proper MyST syntax, clear separation of local vs. CrateDB Cloud configurations, and working code examples. The trailing comma issues previously flagged have been corrected, and the examples follow documentation best practices:

  • Minimal, focused code without unnecessary error handling
  • Default parameters that work out-of-the-box for local instances
  • Cloud section showing only the configuration differences (sslmode, host, credentials)
  • Reference links and quickstart steps are helpful

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@amotl amotl force-pushed the r-ng branch 2 times, most recently from b5dd4a8 to afad979 Compare October 16, 2025 10:48
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Comment on lines 17 to 30
```r
# Install driver on demand.
# RPostgreSQL: R Interface to the 'PostgreSQL' Database System
# https://cran.r-project.org/web/packages/RPostgreSQL/

# Optionally install the PostgreSQL library.
if (!requireNamespace("RPostgreSQL", quietly = TRUE)) {
install.packages("RPostgreSQL", repos="https://cran.r-project.org")
}

# Load the DBI and PostgreSQL libraries.
library(DBI)
library(RPostgreSQL)
drv <- RPostgreSQL::PostgreSQL()
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@coderabbitai suggested:

17-31: Optional: mention RPostgres as the modern alternative.

RPostgres (PostgreSQL DBI driver) is actively maintained and often preferred; it also works with the PG wire protocol.

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Indeed, two driver variants exist. Let's re-evaluate which one to present, or otherwise present both separately.

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🧩 Analysis chain

🌐 Web query:

RPostgres vs RPostgreSQL comparison 2024 2025 which is better actively maintained

💡 Result:

Short answer: RPostgres is the more actively maintained and recommended driver in 2024–2025 (modern C++ backend, DBI‑feature support); RPostgreSQL still exists and receives occasional updates but is older and less featureful. [1][2][3]

Quick evidence

  • RPostgres: actively maintained, CRAN/dev releases in 2024–2025, maintained by Kirill Müller and r-dbi with GitHub/CRAN activity and documentation. [1][4][5]
  • RPostgreSQL: older, C-backed driver with its last CRAN release notes in 2024 (and occasional 2025 packaging updates), but it is not the modern DBI implementation and lacks some features (e.g. full parameterized-query support) found in RPostgres. [6][2]

Recommendation

  • Use RPostgres for new projects (better performance, parameterised queries, automatic cleanup, active r-dbi maintenance). Use RPostgreSQL only if you have legacy code that depends on it. [1][4][6]

Sources

  1. RPostgres project page / r-dbi documentation (features, design, maintainer). [rpostgres.r-dbi.org].
  2. CRAN package page / CRAN-e listing for RPostgres (recent releases/versions).
  3. CRAN checks and r-universe/manual pages showing 2024–2025 builds and versions.
  4. RPostgres GitHub / r-dbi (source/docs/activity).
  5. RPostgreSQL CRAN/CRAN-e package page and release history (last upstream releases in 2024; occasional packaging updates in 2025).

If you want I can list the exact CRAN/GitHub release dates and links (with numbered citations).


🌐 Web query:

RPostgreSQL maintenance status CRAN last update

💡 Result:

RPostgreSQL is currently maintained; the latest CRAN release is version 0.7-8 (released March 28, 2025). Maintainer: Tomoaki Nishiyama. [1][2]

Sources:

  • CRAN update notice (RPostgreSQL 0.7-8, 2025-03-28). [1]
  • Package reference/manual (version 0.7-8; built 2025-07-29). [2]

🌐 Web query:

RPostgres modern R PostgreSQL driver best practices

💡 Result:

Quick best-practices for using RPostgres (concise):

  • Use the DBI + RPostgres API (DBI::dbConnect(RPostgres::Postgres())) and prefer RPostgres over RPostgreSQL (modern C++ backend, safer cleanup). (rpostgres.r-dbi.org)
  • Use parameterized queries / prepared statements (dbSendQuery() + dbBind() or dbExecute()/params) to prevent SQL injection and reuse plans. (dbi.r-dbi.org)
  • Manage transactions explicitly when needed: DBI::dbBegin()/dbCommit()/dbRollback() (or savepoints) to ensure atomicity. Use on.exit()/withr::defer() to always close/rollback on error. (rpostgres.r-dbi.org)
  • Use a connection pool (pool::dbPool) in long‑running apps (Shiny, Plumber) rather than opening ad‑hoc connections; tune minSize/maxSize and idleTimeout and always poolClose() on shutdown. (rstudio.github.io)
  • Fetch large results in chunks: dbSendQuery() → dbFetch(n) → dbClearResult() to avoid OOM. Use dbGetQuery() only if result fits memory. (r-dbi.r-universe.dev)
  • Bulk writes: prefer DBI::dbWriteTable(..., copy = TRUE) or COPY-based approaches for large data loads (use server-side COPY where supported). Validate types (bigint → integer64) and cast params if needed (e.g. "$1::bigint"). (r-dbi.r-universe.dev)
  • Enforce TLS/SSL and least-privilege DB credentials for production; supply host/sslmode and use managed secrets (env vars, keyvault) rather than hardcoding. (rpostgres.r-dbi.org)
  • Clean up: always dbClearResult(), dbDisconnect() (or poolClose()); use on.exit() / withr::defer() to avoid leaks. RPostgres auto-cleans more than older drivers but explicit cleanup is still best practice. (rpostgres.r-dbi.org)
  • Monitor & right-size: monitor active connections on Postgres side, set pool max below DB max_connections, add retry/backoff for transient failures. (compilenrun.com)
  • Use dbplyr for pushdown where appropriate (let the DB do filtering/aggregation); ensure proper indexing and examine query plans for hotspots. (rstudio.github.io)

If you want, I can produce copy‑pasteable example snippets for: (a) secure dbPool usage, (b) parameterized dbBind pattern, or (c) a safe transaction pattern. Which one first?

Citations:


@amotl, based on current information, here's my recommendation:

Key Differences

RPostgres (recommended):

  • Modern, actively maintained by the r-dbi team
  • C++ backend with better performance
  • Full DBI feature support including parameterized queries
  • Automatic connection cleanup
  • Preferred for new projects in 2024-2025

RPostgreSQL:

  • Older C-backed driver
  • Still maintained (v0.7-8 released March 2025)
  • Less featureful than RPostgres
  • Typically only used for legacy code compatibility

Recommendation

I suggest switching to RPostgres as the primary driver in your documentation since:

  1. This is new documentation (not maintaining legacy code)
  2. RPostgres is the community-recommended modern approach
  3. Both work with the PostgreSQL wire protocol, so both should work with CrateDB

You could optionally add a brief note mentioning RPostgreSQL as an alternative for users with existing code, but keeping the main example with RPostgres would be clearer and more helpful.

Would you like me to help update the code example to use RPostgres instead? The changes would be minimal:

# Install RPostgres instead
if (!requireNamespace("RPostgres", quietly = TRUE)) {
    install.packages("RPostgres", repos="https://cran.r-project.org")
}

library(DBI)
library(RPostgres)
# No need to create drv object - use RPostgres::Postgres() directly in dbConnect()

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@coderabbitai: Switched per cdbcf93.

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🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
# Check the commit referenced by the user
git show cdbcf938561 --stat
echo "---"
# Show the actual changes in the R documentation file
git show cdbcf938561 -- docs/connect/r.md

Length of output: 3373


@amotl Perfect! The changes look excellent. You've successfully switched to RPostgres as the primary driver while thoughtfully keeping RPostgreSQL mentioned as an alternative.

The implementation is clean and follows best practices:

  • ✅ Uses RPostgres::Postgres() directly in dbConnect() (no need for the intermediate drv object)
  • ✅ Clear explanation that RPostgres is actively maintained and preferred
  • ✅ Still mentions RPostgreSQL for users who might need it
  • ✅ Updated all references, comments, and examples consistently

The documentation now provides modern, recommended guidance for R users connecting to CrateDB. Great work!

♪┏(・o・)┛♪┗ ( ・o・) ┓♪

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@coderabbitai: Thank you for pointing out RPostgres, so we have been able to improve our docs. 💯

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@amotl You're very welcome! I'm glad the suggestion was helpful. The documentation now reflects the modern best practices for R users, which will benefit the community. Happy to assist anytime! 🚀

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@amotl amotl force-pushed the r-ng branch 2 times, most recently from 2756c81 to 08b6054 Compare October 20, 2025 15:07
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@amotl amotl added the new content New content being added. label Oct 20, 2025
@amotl amotl force-pushed the r-ng branch 2 times, most recently from ef4562c to cde4c11 Compare October 21, 2025 12:44
@amotl amotl merged commit 61cece3 into main Oct 30, 2025
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@amotl amotl deleted the r-ng branch October 30, 2025 09:13
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