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🎉 SWANS #292

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Merged
migbro merged 4 commits into from
Feb 9, 2026
Merged

🎉 SWANS #292

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0173f0a
:tada: create kf swans docker
migbro Jan 16, 2026
dbb0de9
:pencil: change install dir
migbro Jan 16, 2026
2cb3953
:wrench: fixed image to work with current SWANS NF
migbro Jan 20, 2026
d1d2213
update docker table (#293)
github-actions[bot] Jan 20, 2026
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -176,6 +176,7 @@ supremo|1.0.0|docker pull pgc-images.sbgenomics.com/d3b-bixu/supremo:1.0.0
sv2|latest|docker pull pgc-images.sbgenomics.com/d3b-bixu/sv2:latest
svaba|1.1.0|docker pull pgc-images.sbgenomics.com/d3b-bixu/svaba:1.1.0
SVTyper|0.7.1|docker pull pgc-images.sbgenomics.com/d3b-bixu/svtyper:0.7.1
SWANS|v2.1.0|docker pull pgc-images.sbgenomics.com/d3b-bixu/swans:v2.1.0
t1k|v1.0.2|docker pull pgc-images.sbgenomics.com/d3b-bixu/t1k:v1.0.2
t1k|v1.0.5|docker pull pgc-images.sbgenomics.com/d3b-bixu/t1k:v1.0.5
THetA2|0.7.0|docker pull pgc-images.sbgenomics.com/d3b-bixu/theta2:0.7.0
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15 changes: 15 additions & 0 deletions SWANS/v2.1.0/Dockerfile
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@@ -0,0 +1,15 @@
ARG PLATFORM=linux/amd64

FROM --platform=${PLATFORM} francothyroidlab/pond:1.2
LABEL maintainer="Miguel Brown <brownm28@chop.edu>"
LABEL description="Single-entity Workflow ANalysiS Pipeline (SWANS)"

ENV SWANS_VERSION=2.1.0
ENV PATH="$PATH:/SWANS/src/scripts"


WORKDIR /SWANS

RUN curl -L https://github.com/FrancoResearchLab/SWANS/archive/refs/tags/v${SWANS_VERSION}.tar.gz | tar -xz --strip-components=1
WORKDIR /
COPY Dockerfile .