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New in 1.20.0

  • More convenient CLI: No need to explictly use the --fasta/-fa option to
    read the reference fasta file. If --fasta/-fa is unset, ASCIIGenome will
    attempt the find a fasta file in the input file list. So these are all ok:
ASCIIGenome -fa chr7.fa ds051.actb.bam # < v1.20.0
ASCIIGenome chr7.fa ds051.actb.bam     # >= v1.20.0
ASCIIGenome ds051.actb.bam             # No ref at all

dariober added 7 commits June 23, 2025 07:51
This is a temporary solution since we are still printing aa if the user
window size is at single base resolution or bigger. If the window size
is smaller than single base (1 terminal char spans more than one nt) we
should instead adapt the protein sequence and show start and stop
codons.

Also: Fix test failing due to incorrect chrom; reformat.
@dariober dariober merged commit c4a6baa into master Dec 15, 2025
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2 participants