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33 Open 36 Closed
33 Open 36 Closed
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Issues list

uniwig generates files with error brainstorming help wanted Extra attention is needed likely solved uniwig
#115 opened Apr 11, 2025 by ClaudeHu
2
IGD search should take in a query object rather than a bed file path enhancement New feature or request igd
#114 opened Apr 8, 2025 by sanghoonio
1
Can (should) we integrate with IRanges? enhancement New feature or request
#112 opened Mar 24, 2025 by nleroy917
Get rid of warnings documentation Improvements or additions to documentation low priority
#105 opened Mar 5, 2025 by nleroy917
IGD should clear temp folder of temporary igds upon completion good first issue Good for newcomers igd
#97 opened Feb 20, 2025 by donaldcampbelljr
Implement bloom filter
#95 opened Feb 19, 2025 by donaldcampbelljr
1
Allow fasta_digest to accept Path or bytes likely solved
#93 opened Feb 19, 2025 by nsheff
1
2
Clip bam to bed output values using input values from chrom.size file uniwig
#88 opened Feb 14, 2025 by donaldcampbelljr
1
Utilities subcommand enhancement New feature or request new tool Request to implement a new tool question Further information is requested
#82 opened Feb 4, 2025 by donaldcampbelljr
1
Rethink the core overlap computation for the tokenizers -- AIList and speed tokenizers AIList brainstorming enhancement New feature or request tokenizers Region tokenization
#81 opened Feb 4, 2025 by nleroy917
@nleroy917
Write unit tests for AIList AIList
#80 opened Feb 4, 2025 by nleroy917
@nleroy917
1
Validate AIList implementation
#79 opened Feb 4, 2025 by nleroy917
npy2wig brainstorming low priority question Further information is requested uniwig
#78 opened Feb 3, 2025 by ClaudeHu
3
Large number of chromosomes (more than 1000) gives OS Error 24 uniwig
#76 opened Jan 28, 2025 by donaldcampbelljr
Missing keys in npy_meta.json bug Something isn't working uniwig
#75 opened Jan 27, 2025 by ClaudeHu
5
gtars uniwig trying to create coordinates larger than chr bug Something isn't working uniwig
#74 opened Jan 27, 2025 by ljmills
1
17
Is the Core counting logic actually correct? uniwig
#73 opened Jan 24, 2025 by donaldcampbelljr
Add ability to sort then merge multiple files as well as stream to npy enhancement New feature or request uniwig
#72 opened Jan 24, 2025 by donaldcampbelljr
2 tasks
1
Should uniwig custom format include reference genome of the input file? enhancement New feature or request question Further information is requested uniwig
#68 opened Jan 17, 2025 by donaldcampbelljr
IGD should warn the user that outputs already exist in the current directory enhancement New feature or request igd
#63 opened Dec 20, 2024 by donaldcampbelljr
4
Uniwig should warn the user that outputs already exist in the current directory enhancement New feature or request uniwig
#62 opened Dec 20, 2024 by donaldcampbelljr
Implement streaming for bed/narrowPeak to bw workflows enhancement New feature or request
#59 opened Dec 18, 2024 by donaldcampbelljr
if associated .bai does not exist, have uniwig create it (using noodles crate) enhancement New feature or request uniwig
#57 opened Dec 16, 2024 by donaldcampbelljr
1
Implement python bindings for IGD igd
#54 opened Dec 12, 2024 by donaldcampbelljr
Double-tokenizing a RegionSet will result in no tokens bug Something isn't working
#42 opened Oct 26, 2024 by nleroy917
1
ProTip! Exclude everything labeled bug with -label:bug.