NYU Massachusetts Diabetes

[dhhhanushree]

No description provided.

[gemini-code-assist]

Summary of Changes

Hello @dhhhanushree, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request establishes a comprehensive data import mechanism for Massachusetts county-level diabetes statistics. It integrates official health data by providing all required mapping, configuration, and sample files, ensuring that this critical public health information can be accurately processed and represented within the system. The changes facilitate the ingestion of time-series data for diabetes prevalence across various counties in Massachusetts.

Highlights

• New Data Import: Introduced a new data import pipeline for official Massachusetts Department of Health diabetes statistics, providing county-level data.
• Configuration Files: Added all necessary configuration files, including metadata.csv, place_resolver.csv, and pvmap.csv, to define the data processing and mapping for the new dataset.
• Sample Data and Workflow: Included sample input data (sample_input.csv), processed output data (massachusetts_diabetes.csv), and a Data Commons template MCF file (massachusetts_diabetes.tmcf) to demonstrate the full data processing workflow.
• Documentation: A README.md file has been added to detail the purpose of the import, its data source, and the steps required to process the data using the stat_var_processor.py script.

Using Gemini Code Assist

The full guide for Gemini Code Assist can be found on our documentation page, here are some quick tips.

Invoking Gemini

You can request assistance from Gemini at any point by creating a comment using either /gemini <command> or @gemini-code-assist <command>. Below is a summary of the supported commands on the current page.

Feature	Command	Description
Code Review	/gemini review	Performs a code review for the current pull request in its current state.
Pull Request Summary	/gemini summary	Provides a summary of the current pull request in its current state.
Comment	@gemini-code-assist	Responds in comments when explicitly tagged, both in pull request comments and review comments.
Help	/gemini help	Displays a list of available commands.

Customization

To customize Gemini Code Assist for GitHub experience, repository maintainers can create a configuration file and/or provide a custom code review style guide (such as PEP-8 for Python) by creating and adding files to a .gemini/ folder in the base of the repository. Detailed instructions can be found here.

Limitations & Feedback

Gemini Code Assist may make mistakes. Please leave feedback on any instances where its feedback is incorrect or counter productive. You can react with 👍 and 👎 on @gemini-code-assist comments. If you're interested in giving your feedback about your experience with Gemini Code Assist for Github and other Google products, sign up here.

You can also get AI-powered code generation, chat, as well as code reviews directly in the IDE at no cost with the Gemini Code Assist IDE Extension.

Footnotes

1. Review the Privacy Notices, Generative AI Prohibited Use Policy, Terms of Service, and learn how to configure Gemini Code Assist in GitHub here. Gemini can make mistakes, so double check it and use code with caution. ↩

[gemini-code-assist]

Code Review

This pull request adds new data import files for Massachusetts diabetes statistics. The review identifies several areas for improvement across the new files. There are typos in file names and documentation, which should be corrected for clarity. Several CSV files are missing a final newline, which can cause issues with some tools. The README.md contains a command with spaces in a file path and trailing whitespace, which could break execution. Most critically, the test TMCF file (massachusetts_diabetes.tmcf) has a typo in the dataset name and uses an incorrect StatVar DCID, which does not align with the pvmap.csv definition. These issues should be addressed to ensure the import is correct and maintainable.

[hareesh-ms]

/gcbrun

[hareesh-ms]

Are we not planning to configure this in auto refresh ?