The pod package contains implementations of the methods compared in 'Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine'. Currently, this is a bare-bones package however, I will be updating it periodically with documentation, new methods etc.
Using a recent version of R (version >= 3.1) use the following commands:
source("http://bioconductor.org/biocLite.R")
biocLite(c("Biobase", "devtools"))
library(devtools)
install_github(rep="dbottomly/pod", ref="master")
See the vignette for typical usage:
library(pod)
vignette("pod")
Please send me an email if you are interested in contributing.
Dan Bottomly bottomly@ohsu.edu