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biocomp - RAXML/ASTRAL/ETC Workflow

How to use:

  • Create a SCRATCH directory.
  • git clone git@github.com:diegomcarvalho/biocomp.git
  • link the data directory under the biocomp directory. It should be a symbolic link to a scratch directory with all baselines.
  • submit job.slrm

The Pars scrip expect baselines files with the following directory structure

  • baseline
    • astral
    • bucky-output
    • input
      • nexus
        • nexus files...
      • phylip
        • phylp files...
    • raxml
      • bootstrap

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