Select samples for annotation. Hatchling build. Fixes.

[0.6]

Added

• Add an option to rhocall annotate to allow selecting sample for annotation among several in ROH/VCF

Changed

• Refactor rhocall viz ratio calculation

Fixed

• Fixed rhocall viz MNV use flag

[0.5.2]

• HW and AZ are flags, set Number appropriately in VCF
• Use a pyproject.toml, hatchling build

The one with internal viz

[0.5.1]

• fixed viz functionality for later versions of bcftools
• viz can now produce roh bed files
• merged viz into the main rhocall framework
• viz can now produce wig files

Accept updated v1.4 bcftools roh files

New flag --v14 to accept new bcftools roh files.

The version option

--version 😸

The single chromosome release

Single chromosomes. Still some edge cases left for non-standard operation.
Classification pending. A test set has been added, but tests not yet written.
Looking at current test set performance, advise the use of bcftools v1.2 rather than v.1.3 which seems to have broken something in their ROH functionality (see bcftools #529).

Initial release

Initial release! Passes auto-install and performs intended functions on a limited number of test samples.
Many edge cases can remain. Classification of AZ variant types is only a placeholder right now. Future mode will include reading ped file, noting inheritance and sex.