Additional outcomes#5
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mlondschien merged 20 commits intomainfrom Apr 3, 2025
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Pull Request Overview
This PR introduces additional outcome labels and refactors feature engineering logic for ICU data analysis.
- Adds a new optional parameter switches_only to the eep_label function with corresponding documentation and branch logic.
- Implements new outcome labels for respiratory failure (hueser variant), circulatory failure (hyland variant), kidney failure (Lyu variant), and additional labels for hyperglycemia, hypoglycemia, severe MELD, SOFA, and sepsis.
- Adds a feature check in main() that verifies required features are present based on the external features loader.
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manuelburger
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| sofa3 = pl.col("bili").forward_fill(1).backward_fill(1) > 6.0 | ||
| sofa3_at_48h = eep_label(sofa3, 48).alias("sofa3_at_48h") |
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| sofa3 = pl.col("bili").forward_fill(1).backward_fill(1) > 6.0 | |
| sofa3_at_48h = eep_label(sofa3, 48).alias("sofa3_at_48h") | |
| liver_sofa3 = pl.col("bili").forward_fill(1).backward_fill(1) > 6.0 | |
| liver_sofa3_at_48h = eep_label(liver_sofa3, 48).alias("liver_sofa3_at_48h") |
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switches_only=True/False?
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in principle also switches_only=False. I haven't used this task so far, we could also drop it. The MELD variant is more robust and worked out fine, this was a backup when I added "liver support".
manuelburger
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Apr 3, 2025
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