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Update outcomes, add script for ICD codes, update load function#7

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mlondschien merged 16 commits intomainfrom
update-outcomes
Jul 4, 2025
Merged

Update outcomes, add script for ICD codes, update load function#7
mlondschien merged 16 commits intomainfrom
update-outcomes

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  • Added outcomes: severe respiratory failure at 24h, meld score in 24h, log(creatinine) in 24h.
  • The (severe) respiratory failure definition varies by dataset. For NWICU, PICdb, Zigong, where p/f is rarely available, the event is defined via sao2 <= 90
  • For PICdb and Zigong, where map is not or only very sparsely available, a negative circulatory failure event no longer requires a non-missing map >= 65.
  • The "normal urine rate" condition is no longer required for negative labels of kidney failure.
  • I added a script to compute / transform ICD10 codes. This is very specific to my use-case. Should we leave this as is, incorporate this into the features.py, or move it to a separate branch?
  • restructured polars computation to require less memory

@mlondschien mlondschien requested a review from manuelburger June 12, 2025 10:57
@mlondschien mlondschien merged commit f900ff0 into main Jul 4, 2025
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