Bibliotecas:
Biopython
Pandas
Numpy
Tensorflow ou Keras para o modelo de machine Learning
Streamlit
stmol
py3Dmol
biotite

Referências:
app:
https://icons.getbootstrap.com/


Base de dados
https://www.uniprot.org (Estrutura de proteínas)
https://www.sib.swiss/swiss-prot (Estrutura de proteínas)
https://www.rcsb.org/ (Estrutura de proteínas)
https://predictioncenter.org/casp13/ (Estrutura de proteínas)
https://www.cameo3d.org/ (Estrutura de proteínas)

https://www.ecmdb.ca/ (Genoma e Proteoma da E. Coli)


Artigos
Machine Learning em Bioinformatica
• Cheng, J., Tegge, A. N., & Baldi, P. (2008). Machine Learning Methods for Protein Structure Prediction. IEEE Reviews in Biomedical Engineering,1, 41–49. https://doi.org/10.1109/RBME.2008.2008239
• Bonetta, R., & Valentino, G. (2020). Machine learning techniques for protein function prediction. In Proteins: Structure, Function and Bioinformatics (Vol. 88, Issue 3, pp. 397–413). John Wiley and Sons Inc. https://doi.org/10.1002/prot.25832
• AlQuraishi, M. (2021). Machine learning in protein structure prediction. In Current Opinion in Chemical Biology (Vol. 65, pp. 1–8). Elsevier Ltd. https://doi.org/10.1016/j.cbpa.2021.04.005

Aplicações
• Sequeira, A. M., Lousa, D., & Rocha, M. (2021). ProPythia: A Python Automated Platform for the Classification of Proteins Using Machine Learning. Advances in Intelligent Systems and Computing, 1240 AISC, 32–41. https://doi.org/10.1007/978-3-030-54568-0_4
• Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., Bridgland, A., Meyer, C., Kohl, S. A. A., Ballard, A. J., Cowie, A., Romera-Paredes, B., Nikolov, S., Jain, R., Adler, J., … Hassabis, D. (2021). Highly accurate protein structure prediction with AlphaFold. Nature<, 596(7873), 583–589. https://doi.org/10.1038/s41586-021-03819-2
• Fabris F., Freitas A.(2014) , "An Efficient Algorithm for Hierarchical Classification of Protein and Gene Functions," 2014 25th International Workshop on Database and Expert Systems Applications, Munich, Germany, pp. 64-68, doi: 10.1109/DEXA.2014.29.
• Merschmann, Luiz & Freitas, Alex. (2013). An Extended Local Hierarchical Classifier for Prediction of Protein and Gene Functions. 8057. 159-171. 10.1007/978-3-642-40131-2_14. 

Instruções
• Chang, J., Chapman, B., Friedberg, I., Hamelryck, T., de Hoon, M., Cock, P., Antao, T., Talevich, E., &#38; Wilczy´nski, B. W. (n.d.). Biopython Tutorial and Cookbook.