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4 changes: 2 additions & 2 deletions Analyses/QuickStart/URD-QuickStart-AxialMesoderm.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -270,8 +270,8 @@ We can then plot any metadata or gene expression on the dendrogram recovered by
plotTree(axial.tree, "stage", title="Developmental Stage")
plotTree(axial.tree, "GSC", title="GSC (early prechordal plate marker)")
plotTree(axial.tree, "NOTO", title="NOTO (early notochord marker)")
plotTree(axial.tree, "HE1A", title="HE1A (prechordal plate differentiation marker")
plotTree(axial.tree, "COL8A1A", title="COL8A1A (notochord differentiation marker")
plotTree(axial.tree, "HE1A", title="HE1A (prechordal plate differentiation marker)")
plotTree(axial.tree, "COL8A1A", title="COL8A1A (notochord differentiation marker)")
```

Additionally, we can refer back to the tSNE representation to see where the branchpoint
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