Package for generating time series from the theta phase model and some stochasti variations, and data analysis and visualization, following the data analysis protocol detailed in Intermittent ERK oscillations downstream of FGF in mouse embryonic stem cells.
Functionalities
Get time series module - compute time series. - get simulated dt mp. - get_simulated_dt_fixed_mp - get_epsilon_plus_pop_mp
Plotting module - plot time series - plot fft - plot FPT - plot pulses - plot quantifiers - plot activity - plot consecutiveness - plot dt (imports get simulated dt) - plot simulated dt - plot epsilon plus (imports all_comninations from time_series)
Pulse detection module - compute FFT - compute FDT - get consecutive - compute pulses quantifiers - compute pulse detection