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Merged
gforney merged 9 commits into from
Jan 8, 2026
Merged

add doi or url links to references in smokeview .bib files #2532

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51db49b
manuals: clean up bib files - interim commit
gforney Jan 7, 2026
0b77ea5
manuals: add links to bib files - interim commit
gforney Jan 7, 2026
ec459cd
smv tg: correct reference to fds users guide
gforney Jan 7, 2026
f0ae2cb
manuals: minor formatting edits to bib files
gforney Jan 7, 2026
4523fff
Merge remote-tracking branch 'origin/bibs' into bibs
gforney Jan 7, 2026
1305b4f
bibs: corrections to sv_graphics.bib
gforney Jan 7, 2026
29ed3bc
bibs: updates to sv_fire and sv_graphics bib files - correct some doi…
gforney Jan 8, 2026
bd6f981
manuals: add WARNING and ERROR checks when building manuals
Jan 8, 2026
485ece1
bibs: remove binary characters from .bib files
gforney Jan 8, 2026
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421 changes: 219 additions & 202 deletions Manuals/Bibliography/sv_fire.bib
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1,124 changes: 593 additions & 531 deletions Manuals/Bibliography/sv_graphics.bib
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2 changes: 1 addition & 1 deletion Manuals/SMV_Technical_Reference_Guide/SMV_Technical_Reference_Guide.tex
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Expand Up @@ -290,7 +290,7 @@ \section{Version History}
Beginning in the early 1980s and continuing into the 1990s, Howard
Baum and Ronald Rehm of NIST developed the basic flow solver that
evolved into the Fire Dynamics Simulator which was publicly
released in 2000\cite{McGrattan:6}. Their solution technique,
released in 2000\cite{FDS_Users_Guide}. Their solution technique,
known as Large Eddy Simulation or LES, captures numerically very
complicated fire plume dynamics. Unfortunately, the power of the
methodology could not be appreciated without an effective way to
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7 changes: 4 additions & 3 deletions Manuals/SMV_Technical_Reference_Guide/make_guide.sh
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Expand Up @@ -11,9 +11,10 @@ gitrevision=`git describe --abbrev=7 --long --dirty`
echo "\\newcommand{\\gitrevision}{$gitrevision}" > ../Bibliography/gitrevision.tex

pdflatex -interaction nonstopmode SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
biber SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
biber SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide_biber.err
pdflatex -interaction nonstopmode SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
pdflatex -interaction nonstopmode SMV_Technical_Reference_Guide &> SMV_Technical_Reference_Guide.err
cat SMV_Technical_Reference_biber.err >> SMV_Technical_Reference_Guide.err

# Scan and report any errors in the LaTeX build process
if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Paragraph ended before|Missing \\\$ inserted|Misplaced" -I SMV_Technical_Reference_Guide.err | grep -v "xpdf supports version 1.5"` == "" ]]
Expand All @@ -27,13 +28,13 @@ if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Par
fi

# Check for LaTeX warnings (undefined references or duplicate labels)
if [[ `grep -E "undefined|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err` == "" ]]
if [[ `grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err` == "" ]]
then
# Continue along
:
else
echo "LaTeX warnings detected:"
grep -E "undefined|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err
grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Technical_Reference_Guide.err
clean_build=0
fi

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8 changes: 4 additions & 4 deletions Manuals/SMV_Technical_Reference_Guide/proc_10032018.tex
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Expand Up @@ -110,7 +110,7 @@

Complete methods for visualizing smoke and fire data taking into
account interactions between light and smoke require the solution
of the radiation transport equation (RTE)~\cite{Siegel:2001} also
of the radiation transport equation (RTE)~\cite{Howell:2021} also
called the volume rendering equation in the visualization
literature.~\cite{levoy:1988} This equation models how light is
affected after interacting with smoke, a participating medium. In
Expand Down Expand Up @@ -157,7 +157,7 @@
\ssection{RADIATION TRANSPORT EQUATION}

The model used here to visualize smoke is the radiation transport
equation (RTE)~\cite{Siegel:2001}. This equation uses radiance to
equation (RTE)~\cite{Howell:2021}. This equation uses radiance to
represent smoke appearance. Radiance has units of Watts per
square meter per unit solid angle~\si{W/(sr.m^2)}. The solid
angle accounts for the fact that a light source appears brighter
Expand Down Expand Up @@ -187,7 +187,7 @@

The radiation transport equation is used to calculate radiance due
to one or more light sources within a region possibly containing a
participating medium such as smoke~\cite{Siegel:2001}. The change
participating medium such as smoke~\cite{Howell:2021}. The change
in radiance along a ray with direction $\omega$ at any one instant
and wavelength may be expressed using

Expand Down Expand Up @@ -508,7 +508,7 @@
absorption and scattering. Obscuration or opacity is computed along each
ray one grid plane at a time, using the Beer-Lambert law as
follows. The $\alpha=1-\tau$ values are pre-computed by FDS using
the Beer-Lambert law~\cite{Siegel:2001}. The $\alpha$ parameter represents an
the Beer-Lambert law~\cite{Howell:2021}. The $\alpha$ parameter represents an
opacity, 0.0, for completely transparent, and 1.0 for completely
opaque and is given by

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8 changes: 4 additions & 4 deletions Manuals/SMV_Technical_Reference_Guide/smoke_notes.tex
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Expand Up @@ -28,7 +28,7 @@ \section{Introduction}

Complete methods for visualizing smoke and fire data taking into
account interactions between light and smoke require the solution
of the radiation transport equation (RTE)~\cite{Siegel:2001} also
of the radiation transport equation (RTE)~\cite{Howell:2021} also
called the volume rendering equation in visualization
literature.~\cite{levoy:1988} This equation models how light is
affected after interacting with smoke, a participating medium. In
Expand Down Expand Up @@ -111,7 +111,7 @@ \section{Introduction}

\section{Radiation Transport Equation}
The model used here to visualize smoke is the radiation transport
equation (RTE)~\cite{Siegel:2001}. This equation uses radiance to
equation (RTE)~\cite{Howell:2021}. This equation uses radiance to
represent smoke appearance. Radiance has units of Watts per
square meter per unit solid angle~\si{W/(sr.m^2)}. The solid
angle accounts for the fact that a light source appears brighter
Expand Down Expand Up @@ -145,7 +145,7 @@ \section{Radiation Transport Equation}

The radiation transport equation is used to calculate radiance due
to one or more light sources within a region possibly containing a
participating medium such as smoke~\cite{Siegel:2001}. The change
participating medium such as smoke~\cite{Howell:2021}. The change
in radiance along a ray with direction $\omega$ at any one instant
and wavelength may be expressed using

Expand Down Expand Up @@ -572,7 +572,7 @@ \subsection{Computing Opacity}
absorption and scattering. The obscuration is computed along each
ray one grid plane at a time, using the Beer-Lambert law as
follows. The $\alpha=1-\tau$ values are pre-computed by FDS using
the Beer-Lambert law~\cite{Siegel:2001}
the Beer-Lambert law~\cite{Howell:2021}

\begin{equation}
\label{eq:alpha}
Expand Down
4 changes: 2 additions & 2 deletions Manuals/SMV_User_Guide/make_guide.sh
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Expand Up @@ -28,13 +28,13 @@ if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Par
fi

# Check for LaTeX warnings (undefined references or duplicate labels)
if [[ `grep -E "undefined|WARN|multiply defined|multiply-defined" -I SMV_User_Guide.err` == "" ]]
if [[ `grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_User_Guide.err` == "" ]]
then
# Continue along
:
else
echo "LaTeX warnings detected:"
grep -E "undefined|WARN|multiply defined|multiply-defined" -I SMV_User_Guide.err
grep -E "undefined|WARNING|ERROR|multiply defined|multiply-defined" -I SMV_User_Guide.err
clean_build=0
fi

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4 changes: 2 additions & 2 deletions Manuals/SMV_Verification_Guide/make_guide.sh
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Expand Up @@ -28,13 +28,13 @@ if [[ `grep -E "Undefined control sequence|Error:|Fatal error|! LaTeX Error:|Par
fi

# Check for LaTeX warnings (undefined references or duplicate labels)
if [[ `grep -E "undefined|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err` == "" ]]
if [[ `grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err` == "" ]]
then
# Continue along
:
else
echo "LaTeX warnings detected:"
grep -E "undefined|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err
grep -E "undefined|ERROR|WARNING|multiply defined|multiply-defined" -I SMV_Verification_Guide.err
clean_build=0
fi

Expand Down