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map_reads process fails due to SAM/BAM mismatch when using :dev Docker container

Status: Open.

#128 In formbio/laava;

· jeremy-at-asimov opened on Dec 15, 2025

possible bug in full-gap detection

Status: Open.

#113 In formbio/laava;

· rpdarst4 opened on Sep 17, 2025

Question about full-gap classification.

Status: Open.

#105 In formbio/laava;

· Ilike0reos opened on Jun 12, 2025

Critical Input Error: Fails to validate any input format for BAM files

Status: Open.

#104 In formbio/laava;

· SooryaChandra opened on Jun 8, 2025

Request: Improved Documentation for Pipeline Input Files

Status: Open.

#96 In formbio/laava;

· CharlesARoy opened on Apr 9, 2025

With cpus=1, handle TSV post-processing safely

bugSomething isn't workingSomething isn't working

Status: Open.

#90 In formbio/laava;

· etal opened on Feb 27, 2025

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Next

Use Quarto instead of Rmarkdown

Status: Open.

#88 In formbio/laava;

· etal opened on Feb 26, 2025

Configure laava_dev as a proper development container (devcontainer)

Status: Open.

#85 In formbio/laava;

· etal opened on Feb 12, 2025

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Planned

Consolidate the output metadata TSV for multi-sample runs

Status: Open.

#84 In formbio/laava;

· etal opened on Feb 12, 2025

Nanopore reads, input convert it to FASTQ format

questionFurther information is requestedFurther information is requested

Status: Open.

#82 In formbio/laava;

· dgoswamia opened on Feb 10, 2025

Include instrument name in output metadata TSV

Status: Open.

#80 In formbio/laava;

· etal opened on Feb 10, 2025

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Next

Reduce laava Docker image size

good first issueGood for newcomersGood for newcomers

Status: Open.

#76 In formbio/laava;

· etal opened on Jan 30, 2025