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BiocParallel worker error in MAE QC step (create_matrix_dna_rna_cor.R) - could not find function "seqlevelsStyle"

Status: Open.

#671 In gagneurlab/drop;

· efe3506 opened on Apr 2, 2026

Error in rule AberrantSplicing_Overview_R when padjCutoff too low:

Status: Open.

#670 In gagneurlab/drop;

· noeldjitro opened on Mar 27, 2026

Feature Request: Easier Snakemake Resource Management.

Status: Open.

#654 In gagneurlab/drop;

· nickhsmith opened on Nov 26, 2025

MissingOutputException error in rnaVariantCalling

Status: Open.

#640 In gagneurlab/drop;

· helenine opened on Sep 22, 2025

optimHyperParams` function not found when running FRASER2 hyperparameter fitting

Status: Open.

#634 In gagneurlab/drop;

· akosycarz opened on Aug 13, 2025

Error in mae module

Status: Open.

#630 In gagneurlab/drop;

· helenine opened on Aug 8, 2025

HDF5 dataset ".o5_o3_psi5_psi3_dimnames/2" already exists

Status: Open.

#621 In gagneurlab/drop;

· ChiaraF32 opened on Jul 3, 2025

Unzip required for bioconda to run demo in biocontainer.

Status: Open.

#619 In gagneurlab/drop;

· brechtmann opened on Jul 1, 2025

Error in rownames - AberrantExpression module

Status: Open.

#606 In gagneurlab/drop;

· Roshanshafiha opened on Apr 9, 2025

AbberantExpression module error

Status: Open.

#605 In gagneurlab/drop;

· Roshanshafiha opened on Apr 8, 2025

DESEq error on MonoallelicExpression_pipeline_MAE_deseq_mae_R module using demo dataset

Status: Open.

#601 In gagneurlab/drop;

· Roshanshafiha opened on Mar 25, 2025

Error in rule AberrantExpression_pipeline_Counting_mergeCounts_R

Status: Open.

#600 In gagneurlab/drop;

· kdewispelaere opened on Mar 20, 2025