Single neuron projectome of mouse whole cortex

Introduction

Code for the analysis of the single-neuron projectome of mouse whole cortex and results.

Subdivisions of target regions based on the cortical inputs

• GPe (Globus pallidus, external segment)

  • Our study: task_subdivide_GPe/cluster_GPe_K6.nrrd

  • Foster et al.: task_subdivide_GPe/compare_with_others/Substack_116_120_124_128_132_136_seg.nrrd

• GPi (Globus pallidus, internal segment)

  • Our study: task_subdivide_GPi/cluster_GPi_K5.nrrd

• RT (Reticular nucleus of the thalamus)

  • Our study: task_subdivide_RT/K7/label_cluster_real_K7.nrrd

• SNr (Substantia nigra, reticular part)

  • Our study: task_subdivide_SNr/K6.nrrd
  • Foster et al.: task_subdivide_SNr/compare_with_others/Allen_level_*_50um_seg.nrrd

• STN (Subthalamic nucleus)

  • Our study: task_subdivide_STN/cluster_STN_K5.nrrd

• Striatum

  • Our study: task_subdivide_striatum/striatum_subdomains_K14.nrrd
  • Hintiryan et al. and Foster et al. : task_subdivide_striatum/compare_with_others/Substack_41_53_61_67_74_seg_and_ACB.nrrd