Releases: gbouras13/plassembler
Releases · gbouras13/plassembler
v1.8.2
04 Jan 23:25
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Fixes issue with database downloading from Zenodo #79
Fixes issue with Canu spamming HPC job schedulers #78
v1.8.1
28 Sep 07:30
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Fixes minor issues with --skip_qc (#73 ) and --no_chromosome (#74 )
v1.8.0
23 Jun 06:03
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Relaxes Python version dependency to >=3.8,<3.14 from >=3.8,<3.10
Minor change to log file error behaviour #69
Thanks @rrwick for both changes
v1.7.1
14 Jun 03:01
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Minor release to fix #57 (also reported in #67 ) where a crash would occur if using --pacbio_model
v1.7.0
12 Jun 06:34
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Fixes issues with --skip_qc when using non gzipped FASTQ reads (#60 )
Fixes issue with fastp versions #64
Add skip_mash to run Plassembler without the database mash search #61
v1.6.2
08 Mar 07:17
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Bug fix with --force for plassembler download, which will only remove the output directory if --force is specified #49
v1.6.1
03 Mar 03:23
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Bug fixes and added tests for --depth_filter which would crash in some scenarios
v1.6.0
28 Feb 23:46
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Adds --depth_filter. This will filter out all contigs that have long- (and short-read for plassembler run) read copy numbers that are less than the specified depth filter. Defaults to 0.25x.
Adds --unicycler_options and --spades_options which allows passing extra Unicycler options (#46 )
v1.5.1
02 Feb 00:14
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Fixes #44 , where --use_raven was not working (Flye would be used instead). Thanks @wanyuac
v1.5.0
21 Nov 01:52
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If you upgrade to v1.5.0, you will need to update the database using plassembler download
Plassembler v1.5.0 incorporates a new database thanks to the recent PLSDB release 2023_11_03_v2 . Thanks @biobrad for the heads up.