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Releases: gbouras13/plassembler

v1.8.2

04 Jan 23:25
1b0a706

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  • Fixes issue with database downloading from Zenodo #79
  • Fixes issue with Canu spamming HPC job schedulers #78

v1.8.1

28 Sep 07:30
47eb82a

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  • Fixes minor issues with --skip_qc (#73) and --no_chromosome (#74)

v1.8.0

23 Jun 06:03
32ca27d

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  • Relaxes Python version dependency to >=3.8,<3.14 from >=3.8,<3.10
  • Minor change to log file error behaviour #69
  • Thanks @rrwick for both changes

v1.7.1

14 Jun 03:01
7357b60

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Minor release to fix #57 (also reported in #67) where a crash would occur if using --pacbio_model

v1.7.0

12 Jun 06:34
8136449

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  • Fixes issues with --skip_qc when using non gzipped FASTQ reads (#60)
  • Fixes issue with fastp versions #64
  • Add skip_mash to run Plassembler without the database mash search #61

v1.6.2

08 Mar 07:17
acdf41d

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Bug fix with --force for plassembler download, which will only remove the output directory if --force is specified #49

v1.6.1

03 Mar 03:23
d9f0316

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  • Bug fixes and added tests for --depth_filter which would crash in some scenarios

v1.6.0

28 Feb 23:46
e4b5e81

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  • Adds --depth_filter. This will filter out all contigs that have long- (and short-read for plassembler run) read copy numbers that are less than the specified depth filter. Defaults to 0.25x.
  • Adds --unicycler_options and --spades_options which allows passing extra Unicycler options (#46 )

v1.5.1

02 Feb 00:14
6d1cb2a

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  • Fixes #44, where --use_raven was not working (Flye would be used instead). Thanks @wanyuac

v1.5.0

21 Nov 01:52
117bde9

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  • If you upgrade to v1.5.0, you will need to update the database using plassembler download
  • Plassembler v1.5.0 incorporates a new database thanks to the recent PLSDB release 2023_11_03_v2. Thanks @biobrad for the heads up.