Single-cell data transformation documentation#193
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tropnikovvl merged 75 commits intodevelopfrom Apr 9, 2026
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Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
Co-authored-by: Maria Borodaenko <Maria.borodaenko@genestack.com>
…k/user-docs into docs/sc-transformations
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The docs are well written. PR contains clean explanation, references and the how-to guide. Minor overlaps between Diataxis types have been observed. After addressing a few issues, we are good to go! Great job!
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MariaBorodaenko
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This PR introduces the full documentation set for the single-cell HDF5 transformation feature in ODM.
New guides and references: Added quickstart guide, how-to guides, API reference, configuration reference, transformation process reference, and attribute mapping reference for the hdf5-cells transformation pipeline.
Supporting materials: Added example configurations and import commands for public datasets, plus a configuration-to-dataset mapping table.
Conceptual overview: Added about-sc-hdf5-transformations.md explaining the entities involved and how the transformation works.
PS: The linked jupyter notebooks are not available yet as they have been pushed in a different PR. They can be checked in branch
docs/notebooks