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fix: min_intron_length initialization in JunctionsExtractor #193

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fix: min_intron_length initialization in JunctionsExtractor #193

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435e8b8
fix: CMake build errors on Mac resolved
TimD1 Jul 2, 2024
1260bf9
fix: min_intron_length_ initialization in JunctionsExtractor
TimD1 Jul 2, 2024
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19 changes: 17 additions & 2 deletions src/junctions/junctions_extractor.h
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Original file line number Diff line number Diff line change
Expand Up @@ -196,8 +196,23 @@ class JunctionsExtractor {
region_ = ".";
ref_ = "NA";
}
JunctionsExtractor(string bam1, string region1, int strandness1, string strand_tag1, uint32_t min_anchor_length1, uint32_t min_intron_length1, uint32_t max_intron_length1, string ref1) :
bam_(bam1), region_(region1), strandness_(strandness1), strand_tag_(strand_tag1), min_anchor_length_(min_anchor_length1), min_intron_length_(min_anchor_length1), max_intron_length_(max_intron_length1), ref_(ref1){
JunctionsExtractor(
string bam1,
string region1,
int strandness1,
string strand_tag1,
uint32_t min_anchor_length1,
uint32_t min_intron_length1,
uint32_t max_intron_length1,
string ref1) :
bam_(bam1),
region_(region1),
strandness_(strandness1),
strand_tag_(strand_tag1),
min_anchor_length_(min_anchor_length1),
min_intron_length_(min_intron_length1),
max_intron_length_(max_intron_length1),
ref_(ref1) {
junctions_sorted_ = false;
output_file_ = "NA";
output_barcodes_file_ = "NA";
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2 changes: 2 additions & 0 deletions src/utils/bedtools/gzstream/README
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Expand Up @@ -4,3 +4,5 @@
===========================================================================

See index.html for documentation and installation instructions.

Version 1.5 (08 Jan 2003)
1 change: 0 additions & 1 deletion src/utils/bedtools/gzstream/version
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