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1. Spanve Spanve Public

   Spatial Neighbourhood Variably Expressed (Spanve)

   Jupyter Notebook 1 1

2. bioinfo-visualize-utils bioinfo-visualize-utils Public

   personally used visualization utilities in bioinformatics analysis.

   Python

3. single-cell-analysis-utils single-cell-analysis-utils Public

   utils for single-cell RNA seq data analysis; also contain cross validation solution in bulk-RNA seq data

   Python 1

4. TopicVI TopicVI Public

   Prior Gene Programs Motivated Cell Subtype or State Definition by Topic Modeling

   Jupyter Notebook 1

5. TopicVI-reproduce TopicVI-reproduce Public

   Analysis code for reproducing the TopicVI paper

   Jupyter Notebook 1