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  1. awsemmd awsemmd Public

    Forked from adavtyan/awsemmd

    Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code

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  2. D-SCRIPT D-SCRIPT Public

    Forked from samsledje/D-SCRIPT

    A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

    Python

  3. ZEPPI ZEPPI Public

    Forked from honig-lab/ZEPPI

    A method designed for proteome-scale sequence-based evaluation of protein-protein interfaces as defined by structural models of protein-protein interaction complexes.

    Python

  4. alphafold3-pytorch alphafold3-pytorch Public

    Forked from lucidrains/alphafold3-pytorch

    Implementation of Alphafold 3 from Google Deepmind in Pytorch

    Python

  5. openawsem openawsem Public

    Forked from npschafer/openawsem

    An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM

    Python

  6. SeqDance SeqDance Public

    Forked from ShenLab/SeqDance

    code for SeqDance/ESMDance, biophysics-informed protein language models

    Jupyter Notebook