The R-script used to carry out the selection index studies of the bioenergy crop Miscanthus as described in the paper:

Genetic relationships between spring emergence, canopy phenology and biomass yield increase the accuracy of genomic prediction in Miscanthus

Christopher L Davey, Paul Robson, Sarah Hawkins, Kerrie Farrar, John C. Clifton-Brown, Iain S. Donnison, Gancho T. Slavov Journal of Experimental Botany (2017).

The paper will be publically available (open access) as a pdf on-line, please refer to it for details of the analyses the script implements.

Chris Davey and Gancho Slavov wrote the script jointly.

The script file contains details of usage, inputs and outputs, and has line-by-line descriptive comments.