ETL National Health Data

For our project we are using data from the CDC - National Health and Examination Health Survey (2013-2014). We started by exploring the data and determining which of the 6 data sets we wanted to use. We selected the demographic data set and examination data set.

The columns in each data set had variable names. We started our project by creating a variable workbook for the column names Data_Dictionary.xlsx. This allowed us to determine which columns we wanted to keep in our final database. The ETL process will create a normalized database with 10 tables in PostgreSQL.

These are the steps that were taken:

Establish a database schema using quickdatabasediagrams.com

The data was exported to predefine the database in PostgresSQL see CodeTableQBD

Extract

The CSV files were downloaded. Original copies are located in the Resources folder.

1. demographic.csv - source kaggle.com
2. examination.csv - source kaggle.com

Transform

• Filter data to narrow down focus (ex. Xray results and oral health). The data set had over 200 columns, these were narrowed down to a more manageable number. This filtering was done in Excel. demographic_modified.csv, examination_modified.csv
• The CSV files were formated where many columns had a code, with a seperate reference table, instead of actual values listed in each row. Some of these values (gender, family size & if pregnant) were replaced using the find/replace function in Excel. The rest will have reference tables that will be added to our final data set as seperate tables. These reference tables will be added to our final data base.
• Rename columns (variable name to descriptor) in Excel. demographic_modified_final.csv, examination_modified_final.csv
• Establish tables using SQL code and insert values into tables for foreign keys Table_Setup.sql
• Import Demographics and Examination csv files into respective tables
• Create temp table to join Demographics and Examination tables Clean_Up.sql

Load

• Insert records into unique columns of health_study table, excluding records containing any null values
• Verify the health_study table is accurate using Excel to check the number of rows and a select query to check for null values
• Drop Demographics and Examination tables

Team

• Ian Mac Moore @zenfinity
• Haley Huhtala @hchuhtala
• Kaylene Retka @knretka
• Briana Friendt @frieb01