Project: Impact of human gene annotations on RNA-seq differential expression analysis

Scripts used

• https://github.com/hmdlab/eval_rnaseqde_map.git (this repository)
• https://github.com/hmdlab/rnaseqde2.git

Containers used

All containers used in this study are available on the Cloud Library.

• HISAT2
• StringTie
• STAR
• RSEM
• TopHat2
• Cufflinks
• Kallisto
• Sleuth
• Salmon
• rstudio-rnaseq