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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 3

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 191 repositories
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 6 79 8 Updated Jan 23, 2026
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 6 MIT 4 121 9 Updated Jan 23, 2026
  • hubmapconsortium/ingest-validation-tests’s past year of commit activity
    Python 0 0 4 2 Updated Jan 23, 2026
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 14 2 Updated Jan 23, 2026
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 13 MIT 3 175 19 Updated Jan 23, 2026
  • ccf-grlc Public

    ccf-grlc: Useful SPARQL queries for HRA work + API via grlc.io

    hubmapconsortium/ccf-grlc’s past year of commit activity
    JavaScript 1 MIT 1 3 0 Updated Jan 23, 2026
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 39 7 Updated Jan 23, 2026
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 76 (1 issue needs help) 5 Updated Jan 23, 2026
  • sprm Public
    hubmapconsortium/sprm’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 0 2 3 Updated Jan 22, 2026
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers’s past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 27 Updated Jan 22, 2026

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