Implementing AllergyIntollerance and Substance resources

[ewall]

Submitted for extra credit in the CS6440 Intro to Health Informatics class, Spring 2015.

This makes AllergyIntolerance and Substance resources available from the FHIR server. It loads all data from the SyntheticEHR/ExactData tables.

1. In MySql, run the following scripts in HealthPort context to create the empty tables:
   • sql/create_SUBSTANCE_table.sql
   • sql/create_ALLERGYINTOLERANCE_table.sql
2. To load data, run HealthPort web app and browse to http://localhost:8080/HealthPort/UpdateFHIRdB?r=ALLERGYINTOLERANCE --> This should populate the following data:
   • 12 rows in HealthPort.SUBSTANCE (3 from ExactDataSample and 9 from ExactDataCancer since 2 are re-used)
   • 15 rows in HealthPort.ALLERGYINTOLERANCE (3 from ExactDataSample and 12 from ExactDataCancer)
3. Test with URLs like the following:
   • all substances: http://localhost:8080/HealthPort/fhir/Substance
   • all allergies: http://localhost:8080/HealthPort/fhir/AllergyIntolerance
   • specific substance: http://localhost:8080/HealthPort/fhir/Substance/SCT.410942007.RxNORM.7240
   • specific allergy: http://localhost:8080/HealthPort/fhir/AllergyIntolerance/000279041-01.Colistin.1991-09-10
   • allergies for a specific patient: http://localhost:8080/HealthPort/fhir/AllergyIntolerance?subject=Patient/679001982-01
   • allergies to a specific substance: http://localhost:8080/HealthPort/fhir/AllergyIntolerance?substance=Substance/SCT.410942007.RxNORM.258330

--Eric Wallace (ewallace8 at gatech dot edu)