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- Wrap PDF device in make_pdf() so dev.off() always runs
- Fallback to pdf() if cairo_pdf unavailable
- Rename data-frame simulator to simulate_sirs_df to avoid name collision
- Keep det vs stoch plot using ribbon + mean
- R/cum_metrics.R: robust cumulative_incidence(); rewrite attack_rate() using flows + pop_vec; sims×groups for multi-pop stoch; final R(T) only as fallback.

- R/simulate_sirs.R: compatibility tweaks for helpers/outputs.

- scripts/demo_plot_det_vs_stoch.R: discrete-time deterministic vs stochastic alignment demo.

- scripts/make_plots.R: reproducible PNG generation for report.

- Add working dirs: Varun Report/, Varun Presentation/.
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3 participants