Endpoint Gastruloid-on-Microraft Analysis (EGOMRA)

This repository hosts the image analysis code written by Ian Jan¹ for analyzing endpoint fluorescence images of single two-dimensional human gastruloids for the publication below.

Development of Large Scale Gastruloid Array to Identify Aberrant Developmental Phenotypes

Ian Jan¹, Andrew Cearlock^2,3, Min Yang^2,3,4, Nancy L. Allbritton^1,3*

¹Department of Bioengineering, University of Washington, Seattle, WA 98195, USA

²Department of Obstetrics and Gynecology, University of Washington, Seattle, WA 98195, USA

³Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109 USA

⁴Brotman Baty Institute for Precision Medicine, Seattle, WA, 98109 USA

*Author to whom any correspondence should be addressed. E-mail: nlallbr@uw.edu

Journal: APL Bioengineering