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  1. hcr-prober hcr-prober Public

    HCR-prober is a powerful, flexible, and user-friendly command-line pipeline for designing DNA probes for third-generation *in situ* Hybridization Chain Reaction (HCR v3.0).

    Python

  2. TSignal_toolkit TSignal_toolkit Public

    A user-friendly toolkit for predicting and removing signal peptides from protein sequences. Repackaging of TSignal (Dumitrescu et al., 2022) with Singularity container and batch processing scripts.

    Python

  3. crustome crustome Public

    CrusTome: A transcriptome database resource for large-scale analyses across Crustacea. Repository contains example script, links to database download, and supplementary files from manuscript.

    Shell 3

  4. PIA2 PIA2 Public

    Forked from xibalbanus/PIA2

    Modified version of the Phylogenetically Informed Annotation tool (Speiser et al., 2014)

    Java

  5. scripts scripts Public

    Helper scripts for a variety of tasks

    Python 2 1

  6. berghia-chemogpcrs berghia-chemogpcrs Public

    Python