Update to latest matchms, gensim and poetry buildsystem#95
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julianpollmann merged 56 commits intoiomega:masterfrom Oct 29, 2025
Merged
Update to latest matchms, gensim and poetry buildsystem#95julianpollmann merged 56 commits intoiomega:masterfrom
julianpollmann merged 56 commits intoiomega:masterfrom
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…to-SpectrumDocument' into compatability-updates
hechth
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@niekdejonge this is ready for review |
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@hechth This is currently stalled as it is waiting for Gensim 4.4 which should be compatible with numpy>2 and scipy>1.14, which will bring the gensim dependencies in line with matchms dependencies. Then this PR can be merged and spec2vec can be finally updated. |
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@hechth @niekdejonge gensim 4.4.0 with numpy 2 and Python 3.13 is out (not on conda yet). I added a PR to update versions. Tests are passing. |
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This PR supercedes #93, #90, #74 and also #64 .
This includes the new poetry buildsystem for spec2vec as well as an update to work with the latest version of matchms.
I also added support for sparse computations.
So I think once this PR is merged all other PRs can be closed.