Replace Beta/proportion likelihood with negative binomial approach#15

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jakevc merged 17 commits intomainfrom

devin/1748581809-negative-binomial-likelihood

May 30, 2025

Commits on May 30, 2025

Replace Beta/proportion likelihood with negative binomial approach

devin-ai-integration[bot]
and
jakevc
committed
Fix unused variable warning for total_reads parameter

devin-ai-integration[bot]
and
jakevc
committed
Remove unused total_reads parameter entirely

devin-ai-integration[bot]
and
jakevc
committed
Apply cargo fmt formatting fixes

devin-ai-integration[bot]
and
jakevc
committed
Fix posterior probability pipeline to preserve Bayesian calculations

devin-ai-integration[bot]
and
jakevc
committed
Change peak merging to multiply posterior probabilities

devin-ai-integration[bot]
and
jakevc
committed
Fix posterior probability bug in identify_significant_bins

devin-ai-integration[bot]
and
jakevc
committed
fmt
jakevc
committed
Apply cargo fmt to fix CI formatting requirements

devin-ai-integration[bot]
and
jakevc
committed
Merge branch 'devin/1748581809-negative-binomial-likelihood' of https://git-manager.devin.ai/proxy/github.com/jakevc/sbpc into devin/1748581809-negative-binomial-likelihood
devin-ai-integration[bot]
committed
Add debug logging to trace posterior probability calculations

devin-ai-integration[bot]
and
jakevc
committed
Fix posterior probability calculation with proper signal vs noise hypothesis differentiation

devin-ai-integration[bot]
and
jakevc
committed
Apply cargo fmt formatting to bayesian.rs

devin-ai-integration[bot]
and
jakevc
committed
Fix formatting issues - remove extra blank lines for CI

devin-ai-integration[bot]
and
jakevc
committed
Fix clippy warning - remove unnecessary let binding

devin-ai-integration[bot]
and
jakevc
committed
Implement conservative negative binomial parameter estimation

devin-ai-integration[bot]
and
jakevc
committed
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Replace Beta/proportion likelihood with negative binomial approach#15

Replace Beta/proportion likelihood with negative binomial approach#15
jakevc merged 17 commits intomainfrom
devin/1748581809-negative-binomial-likelihood

Commits on May 30, 2025

Replace Beta/proportion likelihood with negative binomial approach

Fix unused variable warning for total_reads parameter

Remove unused total_reads parameter entirely

Apply cargo fmt formatting fixes

Fix posterior probability pipeline to preserve Bayesian calculations

Change peak merging to multiply posterior probabilities

Fix posterior probability bug in identify_significant_bins

fmt

Apply cargo fmt to fix CI formatting requirements

Merge branch 'devin/1748581809-negative-binomial-likelihood' of https://git-manager.devin.ai/proxy/github.com/jakevc/sbpc into devin/1748581809-negative-binomial-likelihood

Add debug logging to trace posterior probability calculations

Fix posterior probability calculation with proper signal vs noise hypothesis differentiation

Apply cargo fmt formatting to bayesian.rs

Fix formatting issues - remove extra blank lines for CI

Fix clippy warning - remove unnecessary let binding

Implement conservative negative binomial parameter estimation

unlog