framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly
pacBioToCA:
- http://www.cbcb.umd.edu/software/PBcR/index.html
- http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=Check_out_and_Compile
- http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=PacBioToCA
- diginorm:
- http://ged.msu.edu/papers/2012-diginorm/
Overall workflow:
- set up data and tools directories first (see readme's there)
- then run analysis from analysis-scripts directory, e.g. 'source fill'