bio_tools (Useful bioinformatic scripts)

Name		Name	Last commit message	Last commit date
Latest commit History 187 Commits
00.scripts		00.scripts
01.dadi_fsc		01.dadi_fsc
02.manual_check_gene		02.manual_check_gene
03.treemix		03.treemix
04.saguarogw		04.saguarogw
05.beagleAndHWE		05.beagleAndHWE
06.smcpp		06.smcpp
07.chloroplast_assembly		07.chloroplast_assembly
08.stairway_plot		08.stairway_plot
09.psmc		09.psmc
10.ihs		10.ihs
11.samtools_callSNP		11.samtools_callSNP
12.mutation_number		12.mutation_number
15.GO_analysis		15.GO_analysis
16.maf2positive_selection		16.maf2positive_selection
17.gwas		17.gwas
18.maf_related_scripts		18.maf_related_scripts
19.kegg_analysis		19.kegg_analysis
20.pseudogene		20.pseudogene
22.ibd_analysis		22.ibd_analysis
24.transcriptome		24.transcriptome
25.inparanoid-ghostz		25.inparanoid-ghostz
26.kegg_enrichment		26.kegg_enrichment
27.fastEPRR		27.fastEPRR
28.phylogeny_reconstruction		28.phylogeny_reconstruction
29.pantherAnalysis		29.pantherAnalysis
30.divergence_time_mcmctree		30.divergence_time_mcmctree
31.gene_charactor_calculate		31.gene_charactor_calculate
32.mafExtractGene_keepGenesFromGff		32.mafExtractGene_keepGenesFromGff
33.merge_gff		33.merge_gff
34.hyphy		34.hyphy
35.novel_gene		35.novel_gene
36.reseq_pipeline		36.reseq_pipeline
37.ensembl_dat_extract		37.ensembl_dat_extract
38.reference_based_assembly/01.generate_reference		38.reference_based_assembly/01.generate_reference
39.housekeepingGeneList		39.housekeepingGeneList
40.tm_predictor		40.tm_predictor
41.kaks_calculator		41.kaks_calculator
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md

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