Data-driven health (BMEN35) - 2023

Omics and interpretable machine learning

This is the exercise in xAI and omic in the course BMEN35 (Data-driven health) @ LTH.

The lecture-slides can be found here as lecture_2023.pptx.

References for further reading

• Biologically informed neural network paper: https://www.nature.com/articles/s41467-023-41146-4
• Biologically informed neural network documentation: https://github.com/InfectionMedicineProteomics/BINN
• SHAP paper: https://papers.nips.cc/paper_files/paper/2017/file/8a20a8621978632d76c43dfd28b67767-Paper.pdf
• SHAP documentation: https://shap.readthedocs.io/en/latest/

Contact

Erik Hartman, erik.hartman@med.lu.se