Merge RGLab:devel into k-motwani:devel-phylo#6

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k-motwani wants to merge 102 commits intok-motwani:devel-phylofrom

Commits on Jul 12, 2021

rm cytoctx
mikejiang
committed

Commits on Jul 13, 2021

convert src/cytoframeAPI.cpp
mikejiang
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port pairVectorRcppWrap
mikejiang
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port keyword apis
mikejiang
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port pdata api for cytoframe
mikejiang
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deal with int64 casting
mikejiang
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get rid of unsigned int
mikejiang
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fix kw_to_sexp
mikejiang
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skip rownames tests
mikejiang
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cpp11 doesn't allow implitcit type convert
mikejiang
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set dimnames properly for matrix
mikejiang
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fix setkeywords
mikejiang
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port h5_set_error_handler
mikejiang
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Commits on Jul 14, 2021

explicit coerse to str for keyword setter
mikejiang
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fix frm_compensate
mikejiang
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add rmatrix_to_arma/arma_to_rmatrix wrappers
mikejiang
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port cs Rcpp APIs
mikejiang
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mv rcpp sugar indexing back to R
mikejiang
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port pdata apis
mikejiang
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fix fcs_to_cytoset
mikejiang
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fix set_pheno_data
mikejiang
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fix cs_get_cytoframe
mikejiang
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gs APIs
mikejiang
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fix cs keyword setter
mikejiang
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Commits on Jul 15, 2021

gh APIs
mikejiang
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fix get pop stats
mikejiang
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set_transformations
mikejiang
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cpp_getGate
mikejiang
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boolFilter_R_to_C
mikejiang
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newGate
mikejiang
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complete gh api
mikejiang
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cpp_getSingleCellExpression
mikejiang
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getPopCounts_cpp
mikejiang
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misc
mikejiang
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fix subset.cytoset
mikejiang
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fix tests
mikejiang
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Commits on Jul 16, 2021

deal with cpp11 bug
mikejiang
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fix cpp_getPopStats
mikejiang
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fix boolFilter_R_to_C
mikejiang
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fix convert_transformer
mikejiang
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fix cluster gate
mikejiang
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rm rcpp debris
mikejiang
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deal with empty cs
mikejiang
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Commits on Jul 20, 2021

make cytoml compile
mikejiang
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Commits on Jul 24, 2021

ensure types are double before passing to cpp11
mikejiang
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fix rectangleGate test
mikejiang
committed

Commits on Jul 26, 2021

cleanup
mikejiang
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Commits on Aug 2, 2021

update emails
mikejiang
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fix bioc test error
mikejiang
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bump
mikejiang
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port hashmap in getPopStats.cpp from master
mikejiang
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merge master
mikejiang
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Commits on Aug 3, 2021

rm direct gpl deps
mikejiang
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Commits on Oct 21, 2022

update to AGPL-3.0
gfinak
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Commits on Oct 22, 2022

Merge branch 'master' of github.com:OzetteTech/flowWorkspace
mikejiang
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merge
mikejiang
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update cp11 code
mikejiang
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update cpp11 code
mikejiang
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bump
mikejiang
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Commits on Oct 24, 2022

fix test error
mikejiang
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Commits on Nov 1, 2022

Commits on Dec 29, 2022

fixed mac seg fault
mikejiang
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Merge branch 'develop'
mikejiang
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bump
mikejiang
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Commits on Apr 25, 2023

Commits on Jun 14, 2023

Commits on Jun 20, 2023

Make stats arguments in gh_pop_get_stats() and gs_pop_get_count_fast() case insensitive. (#385)
djhammill
authored

Commits on Jul 10, 2023

support multirange gate
mikejiang
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print
mikejiang
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Multirangegate (#387)

mikejiang
and
mikejiang
authored
update test to Remove the new time gate to avoid breaking the existing test suite
mikejiang
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Merge branch 'devel' of github.com:RGLab/flowWorkspace into devel
mikejiang
committed

Commits on Aug 17, 2023

Pass additional load_cytoset_from_fcs() arguments through flowSet_to_cytoset() (#389)
djhammill
authored

Commits on Aug 20, 2023

Hotfix/fix gs get singlecell expression by gate (#391)

mikejiang
and
mikejiang
authored

Commits on Oct 24, 2023

Commits on Dec 5, 2023

update transformerList constructor according to the latest scales package
mikejiang
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Merge branch 'devel' into hotfix/update-according-to-latest-scales-package
mikejiang
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bump
mikejiang
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Commits on Jan 13, 2024

use c++17 for std::filesystem
mikejiang
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bump
mikejiang
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Commits on Jan 15, 2024

skip code chunks that fails on mac due to
mikejiang
committed
bump
mikejiang
committed

Commits on Jan 17, 2024

Revert "skip code chunks that fails on mac due to"
mikejiang
committed

Commits on Jan 19, 2024

bump
mikejiang
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Commits on Mar 16, 2024

patch make file for windows
mikejiang
committed
bump
mikejiang
committed

Commits on Apr 30, 2024

Commits on Oct 29, 2024

Commits on Mar 7, 2025

fix make file
mikejiang
committed
bump
mikejiang
committed

Commits on Apr 15, 2025

Commits on Oct 29, 2025

Commits on Jan 1, 2026

update
mikejiang
committed
bump
mikejiang
committed