"Deep conservation of ribosome stall sites across RNA processing genes"

analyses from Materials and Methods section

DATA

Intermediate data files available at Extract to the DATA directory.

Download GTF genome annotations and fasta files from Ensembl . Extract to DATA/genomes/GTF and DATA/fasta.

SCRIPTS

The scripts follow the structure as in Materials and Methods section:

Calling stall sites:

stall_site_calling_and_conservation_analysis

Specific analyses:

SNP_analysis
GO_enrichment
sequence_analysis
structure_analysis
exon_and_protein_domain_anlysis
TM_domain_analysis
premature_termination_analysis

Peak statistics

stats