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Is it possible to use Survivors for viral integration detection in 10X 5' scRNA-seq using R2 reads?

Status: Open.

#23 In kensung-lab/SurVirus;

· xjxiu opened on Jul 31, 2025

CMake Error: HTS_LIB variable NOTFOUND

Status: Open.

#21 In kensung-lab/SurVirus;

· BioCodeZLin opened on Sep 18, 2023

Identification of Split Reads

Status: Open.

#19 In kensung-lab/SurVirus;

· bgarb opened on Mar 2, 2023

Segmentation fault: SurVirus-master/remapper

Status: Open.

#18 In kensung-lab/SurVirus;

· agupta52 opened on Jul 11, 2022

SurVirus on unmapped reads only

Status: Open.

#17 In kensung-lab/SurVirus;

· MjelleLab opened on May 18, 2022

empty "host_bp_seqs.fa"

Status: Open.

#16 In kensung-lab/SurVirus;

· WenjinGudaisy opened on Mar 29, 2022

remappings take very long time

Status: Open.

#15 In kensung-lab/SurVirus;

· dingxm opened on Mar 8, 2022

A question about the maxSCDist parameter

Status: Open.

#14 In kensung-lab/SurVirus;

· Chenmy38 opened on Feb 19, 2022

Virus-side.fq and getting killed

Status: Open.

#13 In kensung-lab/SurVirus;

· Saurav-g-hub opened on Jan 19, 2022

build_region-reads_associations Erros : Segmentation fault (core dumped)

Status: Open.

#12 In kensung-lab/SurVirus;

· lookgene opened on Jan 17, 2022

detect integration sites in human cancer cells from RNA-seq data (L526401A )

Status: Open.

#9 In kensung-lab/SurVirus;

· solmarsab opened on Sep 2, 2021