Refactor minimal input generation#476

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zihuaihuai wants to merge 18 commits intokhanlab:snakenullfrom

zihuaihuai:refactor-minimal-input-generation

Commits on Aug 27, 2025

Fix test bug: use modified config instead of original config
zihuaihuai
committed

Commits on Sep 3, 2025

Commits on Sep 11, 2025

fix: implement proper no_wcard behavior for participant filtering
zihuaihuai
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fix: ensure snakenull normalization updates BidsComponent zip_lists
zihuaihuai
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Commits on Sep 16, 2025

feat: add PuLP compatibility layer for list_solvers/listSolvers API mismatch
zihuaihuai
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feat: add PuLP dependency and comprehensive snakenull tests
zihuaihuai
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feat: allow multiple path templates when snakenull is enabled
zihuaihuai
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feat: implement multi-template handling for snakenull
zihuaihuai
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style: apply code formatting fixes
zihuaihuai
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Fix multi-template handling for snakenull in input generation
zihuaihuai
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Format code and finalize multi-template fixes
zihuaihuai
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Fix wildcard mismatch in multi-template input generation
zihuaihuai
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Apply code formatting and style improvements
zihuaihuai
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fix: ensure snakenull and input generation use BIDS entity ordering for extended entities
zihuaihuai
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Fix BIDS entity ordering and multi-template handling in input generation
zihuaihuai
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Fix snakenull multi-template handling to avoid cartesian product
zihuaihuai
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