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@stefanches7
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BED columns specify needed row order, and BedDatatype class is apparently made for BED format files only. With forced label dtype, I currently have problems reading strand from column 6 - it gets converted to float with default setting (dtype = None) automatically.
I propose to remove dtype specification and oblige BED columns order use.

@stefanches7 stefanches7 requested a review from Avsecz October 2, 2019 10:58
@Avsecz
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Avsecz commented Oct 2, 2019

What about if we have an argument: format="bed3+labels"? Alternative possible values for format would be "bed6", "bed3", ... This would make the format more clear.

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3 participants