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  1. SCORPION SCORPION Public

    Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

    R 27 4

  2. PySNAIL PySNAIL Public

    Smooth-quantile Normalization Adaptation for Inference of co-expression Links

    Python 16 1

  3. retriever retriever Public

    Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data

    R 16 1

  4. lionessR lionessR Public

    Forked from mararie/lionessR

    Single sample network reconstruction in R

    R 7 2

  5. CAVACHON CAVACHON Public

    Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN

    Python 4 2

  6. sponge sponge Public

    Python package to generate prior gene regulatory networks.

    Python 3

Repositories

Showing 10 of 22 repositories
  • SCORPION Public

    Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

    kuijjerlab/SCORPION’s past year of commit activity
    R 27 GPL-3.0 4 0 0 Updated Feb 11, 2026
  • sisana Public

    Single Sample Network Analysis

    kuijjerlab/sisana’s past year of commit activity
    Python 1 MIT 2 3 0 Updated Feb 11, 2026
  • MARMOT Public
    kuijjerlab/MARMOT’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 9, 2026
  • sponge Public

    Python package to generate prior gene regulatory networks.

    kuijjerlab/sponge’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Feb 5, 2026
  • multi-omics-course Public

    Repository for the multi-omics course

    kuijjerlab/multi-omics-course’s past year of commit activity
    HTML 3 MIT 0 0 0 Updated Nov 11, 2025
  • JDRnet Public

    This is a repository for reproducing the analysis in the paper: *title + doi*

    kuijjerlab/JDRnet’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 29, 2025
  • PANGOLIN Public

    this includes the pan-cancer analysis of gene regulatory landscape

    kuijjerlab/PANGOLIN’s past year of commit activity
    R 0 MIT 1 0 0 Updated Oct 3, 2025
  • CAVACHON Public

    Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN

    kuijjerlab/CAVACHON’s past year of commit activity
    Python 4 MIT 2 0 1 Updated Apr 23, 2024
  • PORCUPINE Public
    kuijjerlab/PORCUPINE’s past year of commit activity
    R 2 MIT 1 0 0 Updated Jul 6, 2023
  • HiC_networks Public Forked from Gabrielstav/mastercode

    Pipeline to convert Hi-C into networks, and perform network analysis on the 3D genome. Code developed by Gabriel Stav

    kuijjerlab/HiC_networks’s past year of commit activity
    Python 0 1 0 0 Updated Jun 23, 2023

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