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Inconsistencies in default parameters

Status: Open.

#133 In kundajelab/tfmodisco;

· gtwa-bio opened on Apr 2, 2026

how to prepare for input files

Status: Open.

#132 In kundajelab/tfmodisco;

· BenxiaHu opened on Mar 24, 2026

ValueError: Window (25) cannot be longer than the sequences

Status: Open.

#131 In kundajelab/tfmodisco;

· Aria-D opened on Mar 5, 2026

Revcomp deactivation

Status: Open.

#130 In kundajelab/tfmodisco;

· Kpoumpou opened on Feb 4, 2026

Why are the results so different between annotating the output of modisco meme with TomTom and using modisco report -i -m motifdatabase.meme?

Status: Open.

#129 In kundajelab/tfmodisco;

· biginfor opened on Dec 30, 2025

"MergeMotifsAcrossRuns.ipynb script cannot be executed."

Status: Open.

#128 In kundajelab/tfmodisco;

· biginfor opened on Dec 23, 2025