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Protein inference

Status: Open.

#26 In kusterlab/picked_group_fdr;

· wenbostar opened on Mar 24, 2025

Add support for FlashLFQ

Status: Open.

#24 In kusterlab/picked_group_fdr;

· MatthewThe opened on Dec 6, 2024

Add support for directLFQ

Status: Open.

#20 In kusterlab/picked_group_fdr;

· MatthewThe opened on Feb 29, 2024

NaN values in Intensity column of evidence.txt results in NaN protein intensities

Status: Open.

#19 In kusterlab/picked_group_fdr;

· MatthewThe opened on Feb 29, 2024

MaxLFQ does not quantify proteins only present in a single sample

Status: Open.

#16 In kusterlab/picked_group_fdr;

· MatthewThe opened on Feb 15, 2024

Mokapot gives all PSMs same q-value and PEP if input is filtered at 1% FDR

Status: Open.

#5 In kusterlab/picked_group_fdr;

· MatthewThe opened on Apr 27, 2023