feat: P0-P3 RDT architecture enhancements

.gitignore

@@ -1,93 +1,11 @@
-__pycache__/
-.venv/
-
-.env
-
-image/
-audio/
-video/
-artifacts_three
-dataframe/
-.ruff_cache
-target/
-Cargo.lock
-.claude/
-.pytest_cache
-dist
-
-databases
-static/generated
-conversations/
-sjfdkdjad9si_dsksdjks
-next_swarms_update.txt
-.pytest_cache
-infra.md
-runs
-Financial-Analysis-Agent_state.json
-conversations/
-models/
-evolved_gpt2_models/
-experimental
-ffn_alternatives
-artifacts_five
-experimental/
-encryption
-errors
-chroma
-new_experimental/
-agent_workspace
-.pt
-Accounting Assistant_state.json
-Unit Testing Agent_state.json
-sec_agent
-Devin_state.json
-poetry.lock
-hire_researchers
-agent_workspace
-json_logs
-Medical Image Diagnostic Agent_state.json
-flight agent_state.json
-D_state.json
-artifacts_six
-artifacts_seven
-swarms/__pycache__
-artifacts_once
-transcript_generator.json
-venv
-.DS_Store
-Cargo.lock
-.DS_STORE
-artifacts_logs
-Cargo.lock
-Medical Treatment Recommendation Agent_state.json
-swarms/agents/.DS_Store
-artifacts_two
-logs
-T_state.json
-_build
-conversation.txt
-t1_state.json
-stderr_log.txt
-t2_state.json
-.vscode
-.DS_STORE
 # Byte-compiled / optimized / DLL files
-Transcript Generator_state.json
 __pycache__/
 *.py[cod]
 *$py.class
-.grit
-swarm-worker-01_state.json
-error.txt
-Devin Worker 2_state.json
+
 # C extensions
 *.so
-.ruff_cache
-
 
-errors.txt
-
-Autonomous-Agent-XYZ1B_state.json
 # Distribution / packaging
 .Python
 build/
@@ -102,15 +20,11 @@ parts/
 sdist/
 var/
 wheels/
-share/python-wheels/
 *.egg-info/
 .installed.cfg
 *.egg
-MANIFEST
 
 # PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
 *.manifest
 *.spec
 
@@ -131,7 +45,6 @@ coverage.xml
 *.py,cover
 .hypothesis/
 .pytest_cache/
-cover/
 
 # Translations
 *.mo
@@ -141,7 +54,6 @@ cover/
 *.log
 local_settings.py
 db.sqlite3
-db.sqlite3-journal
 
 # Flask stuff:
 instance/
@@ -154,7 +66,6 @@ instance/
 docs/_build/
 
 # PyBuilder
-.pybuilder/
 target/
 
 # Jupyter Notebook
@@ -163,178 +74,12 @@ target/
 # IPython
 profile_default/
 ipython_config.py
-.DS_Store
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/#use-with-ide
-.pdm.toml
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
-# Environments
-.env
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-.vscode/settings.json
-# -*- mode: gitignore; -*-
-*~
-\#*\#
-/.emacs.desktop
-/.emacs.desktop.lock
-*.elc
-auto-save-list
-tramp
-.\#*
-
-# Org-mode
-.org-id-locations
-*_archive
-
-# flymake-mode
-*_flymake.*
-
-# eshell files
-/eshell/history
-/eshell/lastdir
-
-# elpa packages
-/elpa/
-
-# reftex files
-*.rel
-
-# AUCTeX auto folder
-/auto/
-
-# cask packages
-.cask/
-dist/
-
-# Flycheck
-flycheck_*.el
-
-# server auth directory
-/server/
-
-# projectiles files
-.projectile
-
-# directory configuration
-.dir-locals.el
-
-# network security
-/network-security.data
-
-# Agent Skills - User-created skill directories
-# Keep example_skills/ committed for reference
-# Ignore common user skill directory patterns
-/skills/
-/my_skills/
-/custom_skills/
-/*_skills/
-!example_skills/
-
-
-
 
 # pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/#use-with-ide
-.pdm.toml
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
+.python-version
 
-# Celery stuff
+# celery beat schedule file
 celerybeat-schedule
-celerybeat.pid
 
 # SageMath parsed files
 *.sage.py
@@ -366,65 +111,23 @@ dmypy.json
 # Pyre type checker
 .pyre/
 
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-.vscode/settings.json
-# -*- mode: gitignore; -*-
+# IDE
+.idea/
+.vscode/
+*.swp
+*.swo
 *~
-\#*\#
-/.emacs.desktop
-/.emacs.desktop.lock
-*.elc
-auto-save-list
-tramp
-.\#*
-
-# Org-mode
-.org-id-locations
-*_archive
-
-# flymake-mode
-*_flymake.*
-
-# eshell files
-/eshell/history
-/eshell/lastdir
-
-# elpa packages
-/elpa/
-
-# reftex files
-*.rel
-
-# AUCTeX auto folder
-/auto/
-
-# cask packages
-.cask/
-dist/
-
-# Flycheck
-flycheck_*.el
-
-# server auth directory
-/server/
-
-# projectiles files
-.projectile
-
-# directory configuration
-.dir-locals.el
-
-# network security
-/network-security.data
 
+# OS
+.DS_Store
+Thumbs.db
+
+# Project specific
+*.db
+*.db-journal
+*.db-wal
+*.db-shm
+data/
+memory/
+skills/
+.mythos/